NTDB

Overview

Name	ruvA	Type	Machinery gene
Locus tag	BSF20_RS13650	Genome accession	NZ_CP018152
Coordinates	2620230..2620835 (+)	Length	201 a.a.
NCBI ID	WP_003152683.1	Uniprot ID	A7Z769
Organism	Bacillus amyloliquefaciens strain LM2303
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2615230..2625835

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BSF20_RS13625 (BSF20_13355)	nadA	2616025..2617128 (+)	1104	WP_072588434.1	quinolinate synthase NadA	-
BSF20_RS13630 (BSF20_13360)	safA	2617255..2618460 (+)	1206	WP_060387079.1	SafA/ExsA family spore coat assembly protein	-
BSF20_RS13635 (BSF20_13365)	-	2618608..2619201 (+)	594	WP_003152677.1	YhcN/YlaJ family sporulation lipoprotein	-
BSF20_RS20885	-	2619335..2619454 (+)	120	WP_024085651.1	hypothetical protein	-
BSF20_RS13645 (BSF20_13375)	-	2619586..2620095 (+)	510	WP_012118093.1	intercompartmental signaling factor BofC	-
BSF20_RS13650 (BSF20_13380)	ruvA	2620230..2620835 (+)	606	WP_003152683.1	Holliday junction branch migration protein RuvA	Machinery gene
BSF20_RS13655 (BSF20_13385)	ruvB	2620846..2621850 (+)	1005	WP_003152685.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
BSF20_RS13660 (BSF20_13390)	-	2621843..2622043 (+)	201	WP_043867316.1	DUF2905 domain-containing protein	-
BSF20_RS13665 (BSF20_13395)	queA	2622069..2623097 (+)	1029	WP_003152692.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
BSF20_RS13670 (BSF20_13400)	tgt	2623125..2624270 (+)	1146	WP_014305500.1	tRNA guanosine(34) transglycosylase Tgt	-
BSF20_RS13675 (BSF20_13405)	yajC	2624301..2624561 (+)	261	WP_003152695.1	preprotein translocase subunit YajC	-
BSF20_RS13680 (BSF20_13410)	-	2624613..2624999 (-)	387	WP_003152697.1	TIGR04086 family membrane protein	-
BSF20_RS13685 (BSF20_13415)	-	2625166..2625822 (+)	657	WP_003152699.1	DUF421 domain-containing protein	-

Sequence

Protein

Download Length: 201 a.a. Molecular weight: 22414.85 Da Isoelectric Point: 5.1597

                                >NTDB_id=173262 BSF20_RS13650 WP_003152683.1 2620230..2620835(+) (ruvA) [Bacillus amyloliquefaciens strain LM2303]

MIEFVKGTIDYVSPQYIVIENGGIGYQVFTPNPFIYKVSNQETIFTYHHIKEDAFSLYGFSTREEKALFTKLLNVTGIGP

KGALAILGSGDPGAVIEAIEQEDEAFLVKFPGVGKKTARQIILDLKGKLADVVPEMIDNLFNHEARIEKQEAETALDEAL

EALRVLGYAEKEIKKVLPHLKEETALSTDQYVKKALQKLLK

Nucleotide

Download Length: 606 bp

                                >NTDB_id=173262 BSF20_RS13650 WP_003152683.1 2620230..2620835(+) (ruvA) [Bacillus amyloliquefaciens strain LM2303]

GTGATTGAATTCGTGAAGGGGACGATTGATTATGTATCTCCCCAATACATCGTGATTGAAAACGGCGGAATCGGCTATCA

GGTCTTCACTCCGAATCCGTTTATTTATAAGGTAAGCAATCAAGAGACCATTTTTACGTATCATCATATAAAAGAAGACG

CCTTTTCTTTGTACGGTTTTTCAACCCGGGAAGAAAAAGCGCTTTTCACAAAGCTGCTGAACGTCACCGGCATCGGGCCG

AAAGGGGCGCTCGCCATCCTCGGTTCCGGTGACCCCGGAGCCGTCATCGAAGCGATCGAACAGGAAGATGAAGCCTTTTT

GGTGAAATTTCCGGGTGTGGGCAAAAAAACGGCGCGGCAGATTATTCTTGATTTGAAAGGCAAACTGGCCGACGTCGTGC

CTGAAATGATTGACAACCTGTTCAATCATGAAGCGCGCATTGAAAAACAAGAGGCTGAAACGGCGCTTGACGAGGCGCTT

GAAGCGCTTAGGGTTCTCGGCTACGCCGAAAAAGAAATTAAAAAAGTGCTTCCTCACTTAAAAGAGGAAACGGCGCTTTC

AACAGATCAATATGTGAAAAAAGCATTGCAAAAATTATTAAAGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(155-199)

RuvA N terminal domain (RuvA_N)

(1-59)

Helix-hairpin-helix domain (HHH_5)

(69-126)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A7Z769

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ruvA	Bacillus subtilis subsp. subtilis str. 168	92.537	100	0.925
ruvA	Streptococcus pneumoniae R6	39.806	100	0.408
ruvA	Streptococcus pneumoniae D39	39.806	100	0.408
ruvA	Streptococcus pneumoniae TIGR4	39.806	100	0.408

Detailed information NTG0173262