Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   BSF20_RS13530 Genome accession   NZ_CP018152
Coordinates   2600586..2601281 (+) Length   231 a.a.
NCBI ID   WP_072588431.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain LM2303     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2595586..2606281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSF20_RS13510 (BSF20_13240) - 2596532..2597824 (+) 1293 WP_032856932.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  BSF20_RS13515 (BSF20_13245) comC 2597964..2598716 (+) 753 WP_003152643.1 prepilin peptidase Machinery gene
  BSF20_RS13520 (BSF20_13250) - 2598843..2599844 (+) 1002 WP_003152644.1 SPOR domain-containing protein -
  BSF20_RS13525 (BSF20_13255) - 2599985..2600554 (+) 570 WP_014305513.1 Maf family protein -
  BSF20_RS13530 (BSF20_13260) ysxA/radC 2600586..2601281 (+) 696 WP_072588431.1 RadC family protein Machinery gene
  BSF20_RS13535 (BSF20_13265) mreB 2601373..2602386 (+) 1014 WP_003152647.1 cell shape-determining protein MreB -
  BSF20_RS13540 (BSF20_13270) mreC 2602417..2603280 (+) 864 WP_003152649.1 rod shape-determining protein MreC -
  BSF20_RS13545 (BSF20_13275) mreD 2603277..2603795 (+) 519 WP_003152650.1 rod shape-determining protein MreD -
  BSF20_RS13550 (BSF20_13280) minC 2603849..2604529 (+) 681 WP_003152653.1 septum site-determining protein MinC -
  BSF20_RS13555 (BSF20_13285) minD 2604532..2605335 (+) 804 WP_003152655.1 septum site-determining protein MinD -
  BSF20_RS13560 (BSF20_13290) - 2605463..2606266 (+) 804 WP_007408168.1 M23 family metallopeptidase -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26008.19 Da        Isoelectric Point: 9.1991

>NTDB_id=173261 BSF20_RS13530 WP_072588431.1 2600586..2601281(+) (ysxA/radC) [Bacillus amyloliquefaciens strain LM2303]
MIIRDLPLNLRDFPEKEKPRERLLHFGAEHLSNNELLAILLRTGTKHESVMNLAHRLLRTFDGLRLLKGASAQELSSIPG
IGTVKAVQILAAIELGSRIHKTSAGEHCVIRSPEDGAKYVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIGLLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=173261 BSF20_RS13530 WP_072588431.1 2600586..2601281(+) (ysxA/radC) [Bacillus amyloliquefaciens strain LM2303]
TTGATCATCCGTGATCTGCCGTTAAATTTAAGAGATTTCCCCGAAAAAGAAAAACCGAGAGAGCGGCTTCTGCACTTCGG
AGCCGAACATCTCTCTAACAATGAATTGCTCGCCATCCTGCTGCGGACGGGAACGAAACATGAATCCGTCATGAACCTCG
CTCACCGGCTGCTGCGGACGTTTGACGGGCTGCGCCTGTTAAAAGGCGCCTCTGCCCAGGAGCTTTCCAGCATTCCGGGA
ATCGGAACGGTGAAGGCCGTTCAGATTCTTGCCGCAATTGAGCTGGGGAGCCGCATTCATAAGACATCCGCCGGGGAGCA
TTGCGTCATCCGCTCTCCGGAAGACGGGGCGAAGTATGTGATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATATTTAAATACCAAAAATCAAGTCATTCATAAACGCACCGTTTTTATCGGAAGTCTGAATTCATCTATTGTCCAC
CCGCGGGAGGTGTTTAAAGAAGCTTTCAAACGATCCGCCGCGTCCTTCATTTGCGTTCATAATCATCCTTCAGGAGATCC
TACACCGAGCAGGGAAGATATAGAGGTAACCAGGCGGCTTTTTGAGTGCGGAAATTTAATCGGCATCGGGCTGCTGGATC
ATTTGGTCATTGGTGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

87.446

100

0.874
  radC Streptococcus pneumoniae TIGR4

49.524

90.909

0.45
  radC Streptococcus pneumoniae R6

49.048

90.909

0.446
  radC Streptococcus pneumoniae D39

49.048

90.909

0.446
  radC Streptococcus gordonii str. Challis substr. CH1

47.143

90.909

0.429

Multiple sequence alignment