Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A0U89_RS11940 Genome accession   NZ_CP014674
Coordinates   2539897..2540418 (-) Length   173 a.a.
NCBI ID   WP_070403281.1    Uniprot ID   -
Organism   Kozakia baliensis strain DSM 14400     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2534897..2545418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A0U89_RS17995 - 2535608..2535748 (-) 141 WP_162493493.1 hypothetical protein -
  A0U89_RS11925 (A0U89_11920) - 2535966..2536439 (-) 474 WP_029603605.1 peptidylprolyl isomerase -
  A0U89_RS11930 (A0U89_11925) coaD 2536483..2536995 (-) 513 WP_029603603.1 pantetheine-phosphate adenylyltransferase -
  A0U89_RS11935 (A0U89_11930) gyrA 2536979..2539789 (-) 2811 WP_371859088.1 DNA gyrase subunit A -
  A0U89_RS11940 (A0U89_11935) ssb 2539897..2540418 (-) 522 WP_070403281.1 single-stranded DNA-binding protein Machinery gene
  A0U89_RS11945 (A0U89_11940) uvrA 2540587..2543577 (+) 2991 WP_070403282.1 excinuclease ABC subunit UvrA -
  A0U89_RS11950 (A0U89_11945) - 2543580..2544524 (+) 945 WP_070403283.1 glyoxylate/hydroxypyruvate reductase A -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18922.79 Da        Isoelectric Point: 5.9940

>NTDB_id=173247 A0U89_RS11940 WP_070403281.1 2539897..2540418(-) (ssb) [Kozakia baliensis strain DSM 14400]
MAGSVNKVILVGNLGRDPETRNSQSGSKIVNMTIATSETWNDRNSGEKRERTEWHRVVIFNDRLADVAERFLRKGRKVYI
EGQLQTRKWTDQSGQERYTTEIVLDRFRGELVLIDSNRGGESEAGGGYESGPPRQLNAPRGGGGGMSQPQRSGGGSGGGW
DAPGGDLDDEIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=173247 A0U89_RS11940 WP_070403281.1 2539897..2540418(-) (ssb) [Kozakia baliensis strain DSM 14400]
ATGGCAGGCAGCGTCAATAAGGTAATTTTGGTCGGAAATCTGGGGCGCGACCCAGAGACGCGGAATTCGCAATCGGGGTC
GAAGATCGTCAACATGACGATTGCGACCTCCGAAACCTGGAACGACCGCAATTCGGGTGAGAAGCGCGAGCGGACCGAAT
GGCATCGCGTGGTGATCTTCAACGATCGTCTGGCCGATGTGGCGGAGCGTTTTTTGCGCAAGGGGCGCAAGGTTTACATC
GAAGGGCAATTGCAGACGCGTAAATGGACGGATCAATCCGGCCAGGAGCGTTATACGACGGAGATCGTGCTGGACCGTTT
CCGTGGCGAACTGGTGCTGATCGACAGCAACCGTGGCGGAGAGTCCGAGGCGGGCGGTGGTTATGAGAGCGGGCCGCCGC
GCCAGTTGAATGCGCCCCGTGGTGGTGGCGGTGGGATGTCGCAGCCGCAGCGCAGCGGTGGCGGCAGTGGTGGTGGCTGG
GATGCGCCCGGCGGCGACCTGGACGACGAAATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

46.774

100

0.503
  ssb Glaesserella parasuis strain SC1401

44.681

100

0.486
  ssb Neisseria meningitidis MC58

40

100

0.428
  ssb Neisseria gonorrhoeae MS11

39.459

100

0.422

Multiple sequence alignment