Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PG2T_RS00940 Genome accession   NZ_CP014671
Coordinates   188005..188508 (-) Length   167 a.a.
NCBI ID   WP_068802414.1    Uniprot ID   A0A1B1YQ43
Organism   Immundisolibacter cernigliae strain TR3.2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 183005..193508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PG2T_RS00915 (PG2T_00915) - 184195..184680 (+) 486 WP_068802409.1 aromatic-ring-hydroxylating dioxygenase subunit beta -
  PG2T_RS00920 (PG2T_00920) - 184844..185872 (-) 1029 WP_068802410.1 2Fe-2S iron-sulfur cluster-binding protein -
  PG2T_RS00925 (PG2T_00925) dnaQ 185950..186675 (-) 726 WP_068802411.1 DNA polymerase III subunit epsilon -
  PG2T_RS00930 (PG2T_00930) rnhA 186672..187145 (-) 474 WP_068802412.1 ribonuclease HI -
  PG2T_RS00935 (PG2T_00935) - 187142..187882 (-) 741 WP_145930946.1 class I SAM-dependent methyltransferase -
  PG2T_RS00940 (PG2T_00940) ssb 188005..188508 (-) 504 WP_068802414.1 single-stranded DNA-binding protein Machinery gene
  PG2T_RS00945 (PG2T_00945) - 188534..189883 (-) 1350 WP_068802415.1 MFS transporter -
  PG2T_RS00950 (PG2T_00950) uvrA 190051..192930 (+) 2880 WP_068802416.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 17588.45 Da        Isoelectric Point: 5.0874

>NTDB_id=173185 PG2T_RS00940 WP_068802414.1 188005..188508(-) (ssb) [Immundisolibacter cernigliae strain TR3.2]
MARGINKVILIGNLGKDPEVRYTAGGSAVANLRIATTESWKDKQTGEKKEATEWHSVVLFGKLGEIAGEYLKKGRTVYIE
GRLQTRKYQDKEGVERYSTEIVASDMQMLGGGEGRGEGGGSYGGRQSGGEEPAWGGAAPAAGGRQGGGASKPAADDFGGD
FDDDIPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=173185 PG2T_RS00940 WP_068802414.1 188005..188508(-) (ssb) [Immundisolibacter cernigliae strain TR3.2]
ATGGCGCGCGGCATCAACAAGGTGATTCTGATCGGCAACCTGGGCAAGGACCCGGAGGTGCGCTACACGGCAGGCGGCTC
GGCGGTGGCCAACCTGCGCATCGCCACCACCGAGTCGTGGAAGGACAAGCAGACCGGCGAGAAGAAGGAAGCCACCGAGT
GGCACAGCGTGGTGCTGTTCGGCAAGCTCGGCGAGATTGCCGGCGAGTACCTCAAGAAAGGCCGCACGGTGTACATCGAA
GGCCGTTTGCAGACGCGCAAGTACCAGGACAAGGAAGGCGTCGAGCGCTATAGCACCGAAATCGTCGCCTCGGACATGCA
GATGCTCGGTGGCGGTGAGGGCCGCGGCGAGGGCGGTGGCAGCTACGGCGGCCGCCAGAGCGGTGGTGAAGAGCCGGCCT
GGGGCGGCGCAGCACCTGCGGCCGGCGGTCGACAGGGTGGCGGCGCCAGCAAGCCTGCGGCCGATGACTTCGGCGGCGAT
TTCGACGACGACATCCCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B1YQ43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.977

100

0.569
  ssb Neisseria meningitidis MC58

47.486

100

0.509
  ssb Neisseria gonorrhoeae MS11

47.486

100

0.509
  ssb Glaesserella parasuis strain SC1401

44.624

100

0.497

Multiple sequence alignment