Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AZI96_RS00055 Genome accession   NZ_CP014618
Coordinates   7140..7640 (-) Length   166 a.a.
NCBI ID   WP_005719438.1    Uniprot ID   A0A9X3URY5
Organism   Pasteurella multocida strain Pm-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 543..10860 7140..7640 within 0
IS/Tn 6493..6774 7140..7640 flank 366


Gene organization within MGE regions


Location: 543..10860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AZI96_RS00010 (AZI96_00010) - 543..1031 (+) 489 WP_064775646.1 DUF551 domain-containing protein -
  AZI96_RS00015 (AZI96_00015) - 1135..2043 (+) 909 WP_015691048.1 P63C domain-containing protein -
  AZI96_RS00020 (AZI96_00020) - 2288..2509 (+) 222 WP_064775645.1 hypothetical protein -
  AZI96_RS00025 (AZI96_00025) - 2520..3242 (+) 723 WP_014391442.1 phage antirepressor KilAC domain-containing protein -
  AZI96_RS11565 - 3426..3728 (+) 303 WP_075271365.1 helix-turn-helix domain-containing protein -
  AZI96_RS00030 (AZI96_00030) - 3632..4687 (+) 1056 WP_014391441.1 tyrosine-type recombinase/integrase -
  AZI96_RS00045 (AZI96_00045) folD 5062..5916 (+) 855 WP_005725034.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  AZI96_RS00050 (AZI96_00050) tnpA 6493..6957 (-) 465 WP_014325726.1 IS200/IS605 family transposase -
  AZI96_RS00055 (AZI96_00055) ssb 7140..7640 (-) 501 WP_005719438.1 single-stranded DNA-binding protein Machinery gene
  AZI96_RS00060 (AZI96_00060) uvrA 7812..10643 (+) 2832 WP_014326374.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18673.68 Da        Isoelectric Point: 5.3353

>NTDB_id=172724 AZI96_RS00055 WP_005719438.1 7140..7640(-) (ssb) [Pasteurella multocida strain Pm-3]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGYAPQTASPQYNAPTGGYGAQPSRPATKPAPQNEPPMDMGFE
EDNIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=172724 AZI96_RS00055 WP_005719438.1 7140..7640(-) (ssb) [Pasteurella multocida strain Pm-3]
ATGGCTGGAGTAAATAAAGTAATTATTGTAGGAAACTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGTGAAGC
CGTAGCCAATATCAGCGTCGCGACCAGTGAAAGCTGGATCGACAAAAATACTAACGAACGTCGTGAAGTCACCGAATGGC
ATCGCATCGTATTCTACCGTCGCCAAGCTGAAGTGGCTGGGGAATATCTGCGTAAAGGTTCAAAAGTGTATGTAGAAGGG
CGCCTAAAAACCCGTAAATGGCAAGACCAAAATGGGCAAGACCGCTACACTACCGAGATCCAAGGCGACGTGTTGCAAAT
GCTCGACAGCCGTAACGAACGTCAACAAACCGGCGGCTATGCCCCACAAACCGCTTCGCCACAATATAATGCCCCAACAG
GTGGCTACGGCGCACAACCTTCTCGTCCAGCGACAAAACCCGCTCCACAAAACGAACCTCCAATGGACATGGGCTTTGAG
GAAGATAATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

69.231

100

0.759
  ssb Vibrio cholerae strain A1552

53.591

100

0.584
  ssb Neisseria meningitidis MC58

44.068

100

0.47
  ssb Neisseria gonorrhoeae MS11

44.068

100

0.47

Multiple sequence alignment