Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DSM2777_RS05440 Genome accession   NZ_CP014608
Coordinates   1131167..1131706 (+) Length   179 a.a.
NCBI ID   WP_043488863.1    Uniprot ID   A0AA91EGT8
Organism   Obesumbacterium proteus strain DSM 2777     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1126167..1136706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSM2777_RS05425 (DSM2777_05425) - 1127043..1127471 (+) 429 WP_061553363.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  DSM2777_RS05430 (DSM2777_05430) - 1127464..1127811 (+) 348 WP_025798545.1 MmcQ/YjbR family DNA-binding protein -
  DSM2777_RS05435 (DSM2777_05435) uvrA 1127912..1130743 (-) 2832 WP_046459905.1 excinuclease ABC subunit UvrA -
  DSM2777_RS05440 (DSM2777_05440) ssb 1131167..1131706 (+) 540 WP_043488863.1 single-stranded DNA-binding protein Machinery gene
  DSM2777_RS05445 (DSM2777_05445) - 1131810..1132139 (+) 330 WP_046359512.1 hypothetical protein -
  DSM2777_RS05450 (DSM2777_05450) - 1132221..1133999 (-) 1779 WP_025798538.1 sigma-54 interaction domain-containing protein -
  DSM2777_RS05455 (DSM2777_05455) ygeW 1134510..1135697 (+) 1188 WP_046459904.1 knotted carbamoyltransferase YgeW -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19155.29 Da        Isoelectric Point: 5.2456

>NTDB_id=172619 DSM2777_RS05440 WP_043488863.1 1131167..1131706(+) (ssb) [Obesumbacterium proteus strain DSM 2777]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSETWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWTDQAGVEKYTTEIVVNVGGTMQMLGGRQGGGAPMGGGQAQGQQGGWGQPQQPQGNQFSGGSQPAARPQNAP
AAQPQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=172619 DSM2777_RS05440 WP_043488863.1 1131167..1131706(+) (ssb) [Obesumbacterium proteus strain DSM 2777]
ATGGCCAGCAGAGGCGTTAACAAAGTGATTCTTGTCGGGAATCTGGGTCAAGATCCAGAAGTCCGTTATATGCCGAATGG
TGGTGCTGTAGCCAATATTACTCTGGCCACCTCCGAGACTTGGCGCGACAAGCAAACCGGCGAACAGAAAGAAAAAACCG
AATGGCACCGTGTAGTGTTGTTTGGCAAGCTGGCAGAGGTTGCAGGTGAATATCTGCGTAAAGGTTCTCAGGTTTACATC
GAAGGTGCTTTGCAGACTCGTAAGTGGACCGATCAGGCTGGCGTTGAAAAATACACCACTGAAATCGTCGTAAACGTTGG
CGGCACCATGCAAATGCTGGGTGGACGTCAAGGCGGCGGCGCTCCTATGGGCGGCGGTCAGGCACAAGGGCAGCAGGGCG
GTTGGGGTCAGCCTCAGCAGCCACAGGGCAATCAGTTTAGCGGCGGTTCTCAGCCAGCGGCTCGCCCACAGAATGCGCCT
GCAGCTCAGCCACAAAGCAATGAACCTCCAATGGATTTCGATGACGATATTCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.978

100

0.732
  ssb Glaesserella parasuis strain SC1401

55.376

100

0.575
  ssb Neisseria meningitidis MC58

48.619

100

0.492
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.486

Multiple sequence alignment