Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AZE34_RS04845 Genome accession   NZ_CP014567
Coordinates   975408..975920 (-) Length   170 a.a.
NCBI ID   WP_017175674.1    Uniprot ID   A0A4Q9WS61
Organism   Staphylococcus hominis strain C34847     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 970408..980920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AZE34_RS04815 (AZE34_04760) - 971530..972159 (+) 630 WP_017175678.1 NDxxF motif lipoprotein -
  AZE34_RS04820 (AZE34_04765) - 972256..972834 (-) 579 WP_017175677.1 histidine phosphatase family protein -
  AZE34_RS04825 (AZE34_04770) - 973112..973360 (-) 249 WP_002447983.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  AZE34_RS04830 (AZE34_04775) - 973681..973938 (+) 258 WP_017175676.1 helix-turn-helix domain-containing protein -
  AZE34_RS04835 (AZE34_04780) - 973997..974941 (-) 945 WP_017175675.1 hypothetical protein -
  AZE34_RS04840 (AZE34_04785) rpsR 975124..975366 (-) 243 WP_002447994.1 30S ribosomal protein S18 -
  AZE34_RS04845 (AZE34_04790) ssbA 975408..975920 (-) 513 WP_017175674.1 single-stranded DNA-binding protein Machinery gene
  AZE34_RS04850 (AZE34_04795) rpsF 975942..976238 (-) 297 WP_017175673.1 30S ribosomal protein S6 -
  AZE34_RS04855 (AZE34_04800) - 976486..976677 (+) 192 WP_017175672.1 hypothetical protein -
  AZE34_RS04860 (AZE34_04805) ychF 976747..977844 (-) 1098 WP_019834710.1 redox-regulated ATPase YchF -
  AZE34_RS04865 (AZE34_04810) - 977856..978059 (-) 204 WP_002448008.1 DUF951 domain-containing protein -
  AZE34_RS04870 (AZE34_04815) - 978080..978958 (-) 879 WP_017175670.1 mechanosensitive ion channel family protein -
  AZE34_RS04875 (AZE34_04820) - 979088..979912 (-) 825 WP_017175669.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18727.23 Da        Isoelectric Point: 4.9265

>NTDB_id=172505 AZE34_RS04845 WP_017175674.1 975408..975920(-) (ssbA) [Staphylococcus hominis strain C34847]
MINRVVLVGRLTKDPEYRSTPSGVSVATFTLAVNRTFTNAQGEREADFINVVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVADSVQFLEPKNAQGGQRHQGNNDFQDYGQGFGGSQSGQNTSYNNNNRASNNNQSDNPFANANGP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=172505 AZE34_RS04845 WP_017175674.1 975408..975920(-) (ssbA) [Staphylococcus hominis strain C34847]
ATGATAAATCGAGTTGTATTAGTAGGTCGTTTAACTAAGGATCCAGAATACAGAAGTACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGACTTTATTAACGTTGTTGTAT
TTAGAAGACAAGCAGAAAACGTAAATAACTATCTTTCAAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAATCACGC
AGTTATGAAAATCAAGAAGGTCGTCGTATATTTGTCACTGAAGTTGTAGCGGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCACAAGGTGGACAACGTCATCAAGGAAATAATGATTTCCAAGATTATGGCCAAGGATTTGGTGGTTCACAATCAGGAC
AAAATACATCTTATAATAATAACAATCGTGCATCAAACAATAATCAATCAGATAACCCATTTGCAAATGCGAATGGTCCA
ATTGATATTAGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Q9WS61

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.453

100

0.647
  ssb Latilactobacillus sakei subsp. sakei 23K

53.488

100

0.541
  ssb Glaesserella parasuis strain SC1401

34.043

100

0.376
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

62.353

0.376

Multiple sequence alignment