Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   AYR47_RS25390 Genome accession   NZ_CP014546
Coordinates   5549351..5551576 (-) Length   741 a.a.
NCBI ID   WP_237142506.1    Uniprot ID   -
Organism   Pseudomonas azotoformans strain S4     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5544351..5556576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYR47_RS25355 (AYR47_25355) murB 5544756..5545775 (-) 1020 WP_061448889.1 UDP-N-acetylmuramate dehydrogenase -
  AYR47_RS25360 (AYR47_25360) - 5545772..5546236 (-) 465 WP_033896794.1 low molecular weight protein-tyrosine-phosphatase -
  AYR47_RS25365 (AYR47_25365) kdsB 5546236..5547000 (-) 765 WP_028616766.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AYR47_RS25370 (AYR47_25370) - 5546997..5547182 (-) 186 WP_003174668.1 Trm112 family protein -
  AYR47_RS25375 (AYR47_25375) lpxK 5547207..5548217 (-) 1011 WP_061448890.1 tetraacyldisaccharide 4'-kinase -
  AYR47_RS25380 (AYR47_25380) - 5548217..5548645 (-) 429 WP_061448891.1 ExbD/TolR family protein -
  AYR47_RS25385 (AYR47_25385) exbB 5548642..5549277 (-) 636 WP_033896796.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  AYR47_RS25390 (AYR47_25390) comA 5549351..5551576 (-) 2226 WP_237142506.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AYR47_RS25395 (AYR47_25395) - 5551712..5552227 (+) 516 WP_033896799.1 DUF2062 domain-containing protein -
  AYR47_RS25400 (AYR47_25400) - 5552224..5553594 (-) 1371 WP_061448893.1 sensor histidine kinase -
  AYR47_RS25405 (AYR47_25405) - 5553581..5554309 (-) 729 WP_033896801.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80666.72 Da        Isoelectric Point: 10.8257

>NTDB_id=172486 AYR47_RS25390 WP_237142506.1 5549351..5551576(-) (comA) [Pseudomonas azotoformans strain S4]
MRTGMCAFALGLLALRFLPALPTTGWLIALLVLALMLLPFRTYPLAFFLFGLSWACMSAQWALDDRLRPALDGQTRWVEG
RVIGLPQQTGDGVRFVLTDSRSRNARLPTRIRVSWHGGPPVRSGERWRLAITLKRPAGLLNFHGFDQEAWLLAQRIGATG
TVKDGARLAPAANAWRDGVRQRLLAVDAQGRESGLIALVLGDGSGLTAADWQVLQDTGTVHLLVISGQHIGLLAGLIYGL
IASLARYGCWPRSWPWLPWACGLAFTTALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGLWWPLLLALNGVLVLEPL
ASLQPGFWLSFAAVAVLILAFGGRLGPWSLWQAWTRPQWLIAIGLFPVLLVLGLPISLSAPFANLVAVPWISLVVLPLAL
LGSALLGLPFVGEGLLWLAGGALDVLFKGLAWLAGQMPAWIPAEVPMGYWLVSLLGTVLLLLPKGVPFRLLGLPMLLLAV
FPPRELVPHGQVEVVQLDVGQGQSLILRTRHHTLLYDAGPRSGSFDLGARVVLPSLRKLGVGELDMLLLSHADADHAGGA
AAVAKGMPIKRVVGGETEGLPSSLGTQPCVSGERWTWDGVTFELWQWPDAISGNAKSCVLQVQANGERLLLTGDIDRAAE
HALLASPLAVRTDWLQAPHHGSRSSSSWPFVERLAPRSVLISRGRHNAFGHPHPQVMERYRRLGSQVYDSAEQGAVRLQL
GAFTPPVVARNQRRFWRERLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=172486 AYR47_RS25390 WP_237142506.1 5549351..5551576(-) (comA) [Pseudomonas azotoformans strain S4]
ATGAGGACAGGGATGTGCGCGTTTGCGCTGGGGTTGCTGGCCTTGCGCTTTTTACCGGCATTGCCGACGACCGGTTGGCT
GATCGCTTTGCTGGTGCTGGCCTTGATGCTGTTGCCGTTTCGCACGTATCCCTTGGCGTTTTTCCTGTTCGGGCTGAGTT
GGGCATGCATGAGTGCGCAGTGGGCGCTGGATGACCGCCTCAGGCCGGCGCTGGATGGTCAGACGCGCTGGGTAGAAGGG
CGGGTCATCGGTTTGCCGCAACAGACGGGCGATGGCGTGCGCTTCGTGCTGACCGACAGTCGGTCGCGTAATGCCCGGTT
GCCCACGCGTATCCGGGTCTCCTGGCATGGCGGGCCGCCCGTGCGCAGTGGCGAACGCTGGCGCCTGGCAATCACCCTGA
AACGGCCGGCCGGGTTGCTGAACTTCCATGGGTTTGATCAGGAGGCCTGGTTGCTCGCCCAGCGGATTGGCGCCACGGGC
ACGGTAAAGGACGGAGCACGCCTGGCACCGGCTGCCAATGCCTGGCGCGACGGTGTGCGTCAGCGCTTGCTTGCGGTGGA
CGCCCAGGGCCGGGAATCAGGCCTGATTGCCCTGGTGTTGGGCGATGGCTCTGGATTGACCGCCGCTGATTGGCAGGTGC
TGCAGGACACAGGGACGGTGCATTTGCTGGTCATCTCCGGCCAGCATATCGGTTTGCTCGCGGGTTTGATCTACGGTTTG
ATCGCCAGCCTGGCGCGCTATGGGTGCTGGCCCCGAAGCTGGCCGTGGTTGCCGTGGGCCTGTGGGTTGGCGTTCACCAC
GGCGCTGGGTTACGGCTTGCTCGCCGGGTTTGGCGTGCCGGTGCAGCGCGCCTGTGTGATGGTCGGGTTGGTGTTGTTGT
GGCGTTTGCGCTTTCGTCATCTGGGGCTGTGGTGGCCTTTGTTGCTGGCACTCAATGGGGTGTTGGTGCTGGAGCCGTTG
GCGAGTTTGCAGCCGGGGTTCTGGCTGTCCTTTGCGGCGGTGGCGGTGCTGATCCTGGCGTTTGGTGGCCGTCTGGGGCC
GTGGAGCCTGTGGCAGGCGTGGACCCGGCCGCAGTGGTTGATTGCCATCGGGTTGTTTCCGGTCTTGTTGGTGTTGGGGT
TGCCCATCAGTCTGAGCGCACCGTTCGCTAACCTGGTGGCGGTGCCATGGATCAGCCTGGTGGTGTTGCCGCTGGCTTTG
TTGGGCAGCGCATTGCTGGGGCTGCCCTTCGTGGGTGAAGGATTGCTGTGGTTGGCGGGTGGGGCACTGGATGTCTTGTT
CAAGGGCTTGGCGTGGCTCGCCGGGCAAATGCCCGCCTGGATTCCGGCCGAAGTGCCGATGGGCTATTGGCTGGTGAGTC
TGCTGGGGACCGTGCTGCTCCTGCTGCCAAAGGGTGTTCCATTTCGTCTGCTCGGATTGCCGATGCTACTGTTGGCGGTG
TTTCCCCCGCGAGAATTGGTCCCTCATGGACAAGTAGAGGTCGTGCAACTGGACGTCGGCCAGGGCCAATCGCTGATTCT
GCGCACCCGTCATCACACCTTGCTCTACGACGCCGGCCCGCGCTCCGGAAGCTTTGACCTAGGCGCGCGCGTGGTACTGC
CATCTCTGCGAAAACTCGGGGTAGGGGAGCTGGACATGCTGCTGCTCAGCCACGCCGATGCCGATCATGCGGGTGGTGCA
GCAGCCGTTGCCAAGGGCATGCCGATCAAGCGCGTGGTGGGCGGGGAAACTGAAGGCCTGCCGTCATCGCTCGGCACCCA
ACCTTGTGTCAGCGGCGAGCGATGGACCTGGGACGGTGTGACCTTCGAACTCTGGCAGTGGCCGGACGCCATCAGTGGAA
ACGCGAAGTCCTGCGTCTTGCAGGTGCAGGCCAATGGCGAGCGCCTGCTGCTGACCGGTGATATTGACCGCGCTGCCGAA
CACGCCTTGCTCGCGTCACCCCTGGCGGTGCGCACTGATTGGCTGCAAGCGCCGCACCATGGCAGTCGCAGCTCATCGTC
CTGGCCCTTTGTGGAACGGCTTGCTCCGCGATCCGTGCTGATCTCGCGAGGGCGCCACAACGCGTTCGGCCATCCTCATC
CACAGGTGATGGAACGCTACCGGCGGTTGGGCAGCCAGGTGTATGACAGTGCCGAGCAGGGCGCCGTGCGTCTGCAGTTG
GGGGCTTTTACGCCGCCGGTAGTTGCGCGCAATCAACGCCGGTTCTGGCGCGAGCGGTTACCTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-463)

Domain of unknown function (DUF4131) (DUF4131)

(20-166)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-651)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

61.25

97.166

0.595
  comA Ralstonia pseudosolanacearum GMI1000

35

100

0.378

Multiple sequence alignment