Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   AYR47_RS25385 Genome accession   NZ_CP014546
Coordinates   5548642..5549277 (-) Length   211 a.a.
NCBI ID   WP_033896796.1    Uniprot ID   -
Organism   Pseudomonas azotoformans strain S4     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5543642..5554277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYR47_RS25350 (AYR47_25350) - 5544022..5544693 (+) 672 WP_025858161.1 Bax inhibitor-1/YccA family protein -
  AYR47_RS25355 (AYR47_25355) murB 5544756..5545775 (-) 1020 WP_061448889.1 UDP-N-acetylmuramate dehydrogenase -
  AYR47_RS25360 (AYR47_25360) - 5545772..5546236 (-) 465 WP_033896794.1 low molecular weight protein-tyrosine-phosphatase -
  AYR47_RS25365 (AYR47_25365) kdsB 5546236..5547000 (-) 765 WP_028616766.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AYR47_RS25370 (AYR47_25370) - 5546997..5547182 (-) 186 WP_003174668.1 Trm112 family protein -
  AYR47_RS25375 (AYR47_25375) lpxK 5547207..5548217 (-) 1011 WP_061448890.1 tetraacyldisaccharide 4'-kinase -
  AYR47_RS25380 (AYR47_25380) - 5548217..5548645 (-) 429 WP_061448891.1 ExbD/TolR family protein -
  AYR47_RS25385 (AYR47_25385) exbB 5548642..5549277 (-) 636 WP_033896796.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  AYR47_RS25390 (AYR47_25390) comA 5549351..5551576 (-) 2226 WP_237142506.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AYR47_RS25395 (AYR47_25395) - 5551712..5552227 (+) 516 WP_033896799.1 DUF2062 domain-containing protein -
  AYR47_RS25400 (AYR47_25400) - 5552224..5553594 (-) 1371 WP_061448893.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22873.05 Da        Isoelectric Point: 7.3615

>NTDB_id=172485 AYR47_RS25385 WP_033896796.1 5548642..5549277(-) (exbB) [Pseudomonas azotoformans strain S4]
MWELVKSGGWMMLPIIMSSIAALGIVAERLWTLRASRVTPEHLLGQVWAWIKNKQLDKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=172485 AYR47_RS25385 WP_033896796.1 5548642..5549277(-) (exbB) [Pseudomonas azotoformans strain S4]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCATGAGCTCTATCGCCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTGCGCGCCAGCCGCGTGACCCCCGAGCATTTACTGGGGCAGGTCTGGGCCTGGATCAAGAACA
AGCAGCTCGACAAGGAAAAGCTCAAGGAACTGCGCGCCAATTCCCCGCTGGGTGAAATCCTCGCCGCTGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAGGAAGCCGCGGCCCGCGTCATCCATGAACTGGAGCGCTACAT
CAACGCCCTCGGCACCATCGCCGCCATGGCGCCGTTGCTCGGCTTGCTCGGCACGGTGCTGGGCATGATCGATATCTTCA
GCTCGTTCATGGGCTCCGGCATGACCACCAACGCAGCCGTACTGGCCGGTGGCATTTCCAAGGCGCTGATCACTACGGCT
GCCGGCCTGATGGTCGGTATTCCTTCGGTGTTCTTCCACCGTTTCCTGCAACGCCGCATCGATGAACTGGTGGTCGGCAT
GGAGCAGGAAGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGACGTGGACCTGGTTGGGGGAAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.834

100

0.848

Multiple sequence alignment