Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AZE99_RS11435 Genome accession   NZ_CP014545
Coordinates   2423401..2423928 (-) Length   175 a.a.
NCBI ID   WP_067201181.1    Uniprot ID   A0A127MGJ3
Organism   Sphingorhabdus sp. M41     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2418401..2428928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AZE99_RS11420 (AZE99_11420) - 2418839..2421298 (+) 2460 WP_067201176.1 outer membrane beta-barrel protein -
  AZE99_RS11425 (AZE99_11425) - 2421396..2422598 (+) 1203 WP_067201177.1 hypothetical protein -
  AZE99_RS11430 (AZE99_11430) - 2422721..2423314 (+) 594 WP_067201179.1 hypothetical protein -
  AZE99_RS11435 (AZE99_11435) ssb 2423401..2423928 (-) 528 WP_067201181.1 single-stranded DNA-binding protein Machinery gene
  AZE99_RS11440 (AZE99_11440) - 2423976..2425835 (-) 1860 WP_067201183.1 ferrous iron transporter B -
  AZE99_RS11445 (AZE99_11445) - 2425839..2426108 (-) 270 WP_067201185.1 FeoA family protein -
  AZE99_RS11450 (AZE99_11450) - 2426240..2426905 (-) 666 WP_067201188.1 COQ9 family protein -
  AZE99_RS11455 (AZE99_11455) - 2427036..2428136 (+) 1101 WP_067201190.1 alkene reductase -
  AZE99_RS11460 (AZE99_11460) - 2428152..2428607 (-) 456 WP_082788349.1 DUF1465 family protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 17952.56 Da        Isoelectric Point: 4.9923

>NTDB_id=172467 AZE99_RS11435 WP_067201181.1 2423401..2423928(-) (ssb) [Sphingorhabdus sp. M41]
MAGGINKVIIVGNLGKDPEVRTFANGGKVCNFSVATSESWKDKQTGERKEKTEWHNISIYNEGLAGVAEKYLRKGSKVYL
EGKLQTRKWQDQSGNDRYSTDVVLQGFDAKMEMLDSKPGGGGQGGGSNDGWGGGAPSGGGSGGGSGGGWGQTGGGPGGGQ
GGGAFDSDLDDDVPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=172467 AZE99_RS11435 WP_067201181.1 2423401..2423928(-) (ssb) [Sphingorhabdus sp. M41]
ATGGCCGGCGGCATCAACAAAGTCATCATCGTAGGCAATCTGGGCAAGGATCCGGAAGTGCGTACTTTTGCAAACGGCGG
AAAAGTCTGCAATTTCAGCGTCGCGACATCGGAAAGCTGGAAAGACAAGCAAACCGGCGAGCGCAAGGAAAAGACCGAGT
GGCACAATATCTCGATCTATAACGAAGGCCTGGCCGGCGTTGCCGAAAAATATCTGCGCAAGGGCAGCAAGGTCTATCTC
GAAGGCAAGCTGCAAACCCGCAAATGGCAGGACCAGTCCGGCAATGACCGCTATTCGACCGACGTCGTGTTGCAGGGTTT
CGACGCGAAAATGGAAATGCTCGACAGCAAGCCCGGCGGCGGCGGTCAGGGCGGCGGCTCCAATGACGGCTGGGGCGGCG
GCGCGCCTTCGGGTGGCGGCTCTGGCGGTGGTTCCGGCGGCGGCTGGGGCCAGACCGGTGGCGGTCCCGGCGGCGGTCAG
GGAGGCGGCGCCTTTGACAGCGATCTGGACGACGATGTTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A127MGJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.73

100

0.526
  ssb Glaesserella parasuis strain SC1401

48.649

100

0.514
  ssb Neisseria meningitidis MC58

40.223

100

0.411
  ssb Neisseria gonorrhoeae MS11

40.223

100

0.411

Multiple sequence alignment