Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | AYM92_RS08255 | Genome accession | NZ_CP014542 |
| Coordinates | 1562116..1562607 (-) | Length | 163 a.a. |
| NCBI ID | WP_023605268.1 | Uniprot ID | - |
| Organism | Streptococcus pyogenes strain STAB14018 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1557116..1567607
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AYM92_RS08240 (AYM92_07960) | - | 1559847..1560791 (+) | 945 | WP_002983147.1 | magnesium transporter CorA family protein | - |
| AYM92_RS08245 (AYM92_07965) | - | 1560924..1561580 (+) | 657 | WP_010922629.1 | DUF1129 domain-containing protein | - |
| AYM92_RS08250 (AYM92_07970) | rpsR | 1561713..1561952 (-) | 240 | WP_002983142.1 | 30S ribosomal protein S18 | - |
| AYM92_RS08255 (AYM92_07975) | ssb | 1562116..1562607 (-) | 492 | WP_023605268.1 | single-stranded DNA-binding protein | Machinery gene |
| AYM92_RS08260 (AYM92_07980) | rpsF | 1562629..1562919 (-) | 291 | WP_002983117.1 | 30S ribosomal protein S6 | - |
| AYM92_RS08265 (AYM92_07985) | - | 1563092..1563385 (-) | 294 | WP_002983113.1 | hypothetical protein | - |
| AYM92_RS08270 (AYM92_07990) | mutY | 1563553..1564707 (+) | 1155 | WP_002988276.1 | A/G-specific adenine glycosylase | - |
| AYM92_RS08275 (AYM92_07995) | - | 1564884..1565471 (+) | 588 | WP_076639280.1 | helix-turn-helix domain-containing protein | - |
| AYM92_RS08280 (AYM92_08000) | trxA | 1565523..1565855 (-) | 333 | WP_001932060.1 | thioredoxin | - |
| AYM92_RS08285 (AYM92_08005) | - | 1565918..1566418 (-) | 501 | WP_161230218.1 | phosphatase PAP2 family protein | - |
Sequence
Protein
Download Length: 163 a.a. Molecular weight: 17993.81 Da Isoelectric Point: 4.8894
>NTDB_id=172421 AYM92_RS08255 WP_023605268.1 1562116..1562607(-) (ssb) [Streptococcus pyogenes strain STAB14018]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNISSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNISSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF
Nucleotide
Download Length: 492 bp
>NTDB_id=172421 AYM92_RS08255 WP_023605268.1 1562116..1562607(-) (ssb) [Streptococcus pyogenes strain STAB14018]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACGCTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAACGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCGGCTGAAAATTTAGCGAACTGGGCTAAAAAAGGTGCTTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGCCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGGTTTAACAATAACATTTCATCATCAAACAGTTACTCAGCGC
CTGCACAACAAACACCTAACTTTGGAAGAGATGATAGCCCATTTGGCAATTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACGCTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAACGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCGGCTGAAAATTTAGCGAACTGGGCTAAAAAAGGTGCTTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGCCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGGTTTAACAATAACATTTCATCATCAAACAGTTACTCAGCGC
CTGCACAACAAACACCTAACTTTGGAAGAGATGATAGCCCATTTGGCAATTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.884 |
100 |
0.632 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
59.195 |
100 |
0.632 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
57.547 |
65.031 |
0.374 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
54.128 |
66.871 |
0.362 |