Detailed information NTG0172376

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: A2U21_RS03625
• Genome accession: NZ_CP018034
• Coordinates: 697021..698025 (+)
• Length: 334 a.a.
• NCBI ID: WP_021109774.1
• Uniprot ID: -
• Organism: Glaesserella parasuis str. Nagasaki
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 692021..703025

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A2U21_RS03615 (A2U21_03490)	-	692524..694995 (+)	2472	WP_021109772.1	class I adenylate cyclase	-
A2U21_RS03620 (A2U21_03495)	-	695010..696944 (+)	1935	WP_021109773.1	monovalent cation:proton antiporter-2 (CPA2) family protein	-
A2U21_RS03625 (A2U21_03500)	ruvB	697021..698025 (+)	1005	WP_021109774.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
A2U21_RS03630 (A2U21_03505)	-	698206..699843 (+)	1638	WP_021109775.1	ABC transporter substrate-binding protein	-
A2U21_RS03635 (A2U21_03510)	oppB	699938..700861 (+)	924	WP_005711628.1	oligopeptide ABC transporter permease OppB	-
A2U21_RS03640 (A2U21_03515)	oppC	700872..701792 (+)	921	WP_005711630.1	oligopeptide ABC transporter permease OppC	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 36897.24 Da
• Isoelectric Point: 4.8644

>NTDB_id=172376 A2U21_RS03625 WP_021109774.1 697021..698025(+) (ruvB) [Glaesserella parasuis str. Nagasaki]
MIEADRIISASAKKEDETIDRAIRPKMLADYVGQPSVREQMEIFIKAAKLRNDALDHLLIFGPPGLGKTTLANIIANEMG
VNIRTTSGPVLEKAGDLAAILTNLEPYDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGA
TTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVSRSASCLNLNLSPEGAYEIARRSRGTPRIANRLLRRVRDFADVRNNG
IISSDIAKQALTMLDVDSEGFDFMDRKLLSAVIERFDGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRIA
TSRTYSHLGLVKSE

Nucleotide

• Length: 1005 bp

>NTDB_id=172376 A2U21_RS03625 WP_021109774.1 697021..698025(+) (ruvB) [Glaesserella parasuis str. Nagasaki]
ATGATTGAAGCTGACAGAATTATCAGTGCCTCAGCAAAGAAAGAGGACGAAACTATCGATCGTGCAATTCGCCCTAAAAT
GCTTGCCGATTATGTCGGACAGCCGTCAGTGCGAGAGCAGATGGAAATTTTTATCAAGGCGGCTAAATTACGCAATGATG
CTTTAGATCACCTGTTGATCTTTGGACCACCAGGCTTAGGTAAAACGACACTGGCGAACATTATTGCAAACGAAATGGGC
GTGAATATCCGCACGACATCAGGGCCAGTGCTGGAAAAAGCAGGGGATCTTGCCGCAATTCTGACAAACCTCGAACCCTA
CGATGTGCTTTTTATTGACGAAATTCACCGCTTGTCGCCAGCCATTGAGGAAGTGTTGTATCCAGCAATGGAAGATTATC
AGCTTGATATTATGATTGGTGAAGGCCCTGCCGCACGTTCCATTAAACTCGATCTTCCCCCATTTACCCTCGTTGGAGCA
ACAACACGAGCAGGTTCTTTAACTTCGCCTTTGCGTGACCGCTTTGGCATTGTGCAACGCCTGGAGTTTTATTCCGTTGA
AGATCTCACTTCGATTGTAAGCCGTAGTGCCAGCTGTTTGAATTTAAATTTATCCCCTGAGGGAGCCTACGAAATTGCAC
GCCGTTCACGCGGAACGCCTCGAATTGCCAATCGTTTATTACGCCGAGTACGAGATTTTGCAGATGTACGAAACAACGGC
ATTATTTCCTCTGACATTGCAAAACAAGCCTTAACGATGTTAGATGTCGATTCCGAAGGCTTTGATTTTATGGACAGAAA
ATTACTCTCTGCTGTCATTGAGCGATTTGATGGCGGACCCGTTGGATTAGATAACCTTGCAGCCGCCATCGGCGAAGAAC
GGGAAACCATTGAAGATGTGCTAGAGCCTTATTTAATCCAACAAGGCTTTTTGCAACGTACGCCAAGAGGGCGGATAGCA
ACGTCGAGGACTTATAGTCATCTGGGGTTGGTAAAATCTGAATAG

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (23-181)

• RuvB AAA lid domain (AAA_lid_4) (184-257)

• RuvB C-terminal winged helix domain (WHD_RuvB) (259-328)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	61.963	97.605	0.605
ruvB	Streptococcus pneumoniae TIGR4	59.574	98.503	0.587
ruvB	Streptococcus pneumoniae R6	59.574	98.503	0.587
ruvB	Streptococcus pneumoniae D39	59.574	98.503	0.587
ruvB	Synechocystis sp. PCC 6803	54.829	96.108	0.527
ruvB	Helicobacter pylori 26695	53.681	97.605	0.524