Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AYJ52_RS03890 Genome accession   NZ_CP014477
Coordinates   822367..822954 (-) Length   195 a.a.
NCBI ID   WP_005066890.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AP_882     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 817367..827954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYJ52_RS03865 (AYJ52_03865) - 817386..818885 (+) 1500 WP_017402825.1 PLP-dependent aminotransferase family protein -
  AYJ52_RS03870 (AYJ52_03870) - 818946..820388 (-) 1443 WP_017387544.1 amino acid permease -
  AYJ52_RS03875 (AYJ52_03875) ydcN 820694..821242 (-) 549 WP_002117406.1 helix-turn-helix domain-containing protein -
  AYJ52_RS03880 (AYJ52_03880) - 821311..822006 (+) 696 WP_029768967.1 AzlC family ABC transporter permease -
  AYJ52_RS03885 (AYJ52_03885) - 822003..822326 (+) 324 WP_005804463.1 AzlD domain-containing protein -
  AYJ52_RS03890 (AYJ52_03890) ssb 822367..822954 (-) 588 WP_005066890.1 single-stranded DNA-binding protein Machinery gene
  AYJ52_RS03895 (AYJ52_03895) yajR 823006..824370 (-) 1365 WP_023187735.1 MFS transporter -
  AYJ52_RS03900 (AYJ52_03900) - 824517..825599 (-) 1083 WP_017387546.1 DUF475 domain-containing protein -
  AYJ52_RS03905 (AYJ52_03905) tenA 825862..826536 (+) 675 WP_017387547.1 thiaminase II -
  AYJ52_RS03910 (AYJ52_03910) - 826603..826974 (+) 372 WP_005066882.1 MerR family transcriptional regulator -
  AYJ52_RS03915 (AYJ52_03915) - 827078..827884 (+) 807 WP_017387548.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21223.01 Da        Isoelectric Point: 6.4822

>NTDB_id=171835 AYJ52_RS03890 WP_005066890.1 822367..822954(-) (ssb) [Acinetobacter pittii strain AP_882]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEAWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGNGYQNNNNQGGGYGQNSGGYGNQG
GFGNGGSNPQAGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=171835 AYJ52_RS03890 WP_005066890.1 822367..822954(-) (ssb) [Acinetobacter pittii strain AP_882]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAATTTTCAATCGCGACAAGTGAAGCTTGGACTGATAAAAATACCGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTCTTGCGTAAAGGTTCTAAGGTTTATATTGAAGGT
TCACTACGTACACGTCAGTGGACAGACCAAAATGGCCAAGAGCGTTACACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTCGCTGGTGGTAATGATTTTAATCAACCACGTTTTAACGCACCTCAAC
AAGGTGGTAATGGTTATCAAAACAATAACAACCAAGGTGGCGGCTACGGCCAAAACAGCGGTGGTTATGGTAACCAAGGT
GGTTTCGGTAATGGTGGAAGCAATCCTCAAGCGGGTGGTTTTGCGCCTAAAGCTCCGCAACAACCAGCTTCTGCACCAGC
TGATTTAGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.475

100

0.544
  ssb Vibrio cholerae strain A1552

44.5

100

0.456
  ssb Neisseria meningitidis MC58

39.394

100

0.4
  ssb Neisseria gonorrhoeae MS11

37.879

100

0.385

Multiple sequence alignment