Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AB520_RS01605 Genome accession   NZ_CP017684
Coordinates   354854..355357 (+) Length   167 a.a.
NCBI ID   WP_000934799.1    Uniprot ID   A0A0D1JHQ1
Organism   Staphylococcus aureus strain CFSAN007847     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 349854..360357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB520_RS01570 (AB520_01545) spo0J 350794..351639 (+) 846 WP_001573568.1 ParB/RepB/Spo0J family partition protein Regulator
  AB520_RS01575 (AB520_01550) - 351793..352674 (+) 882 WP_000373076.1 mechanosensitive ion channel family protein -
  AB520_RS01580 (AB520_01555) - 352704..352907 (+) 204 WP_000157348.1 DUF951 domain-containing protein -
  AB520_RS01585 (AB520_01560) ychF 352919..354016 (+) 1098 WP_001218732.1 redox-regulated ATPase YchF -
  AB520_RS01590 (AB520_01565) - 354102..354293 (-) 192 WP_001052483.1 hypothetical protein -
  AB520_RS01600 (AB520_01570) rpsF 354537..354833 (+) 297 WP_001261460.1 30S ribosomal protein S6 -
  AB520_RS01605 (AB520_01575) ssbA 354854..355357 (+) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  AB520_RS01610 (AB520_01580) rpsR 355409..355651 (+) 243 WP_000897044.1 30S ribosomal protein S18 -
  AB520_RS01615 (AB520_01585) - 355883..356602 (-) 720 WP_000400841.1 type II toxin-antitoxin system PemK/MazF family toxin -
  AB520_RS01620 (AB520_01590) - 356715..357929 (-) 1215 WP_099119596.1 tyrosine-type recombinase/integrase -
  AB520_RS01625 (AB520_01595) - 358090..358713 (-) 624 WP_000230361.1 helix-turn-helix domain-containing protein -
  AB520_RS01630 (AB520_01600) - 358862..359026 (+) 165 WP_001611932.1 helix-turn-helix domain-containing protein -
  AB520_RS01635 (AB520_01605) - 359027..359299 (+) 273 WP_001138305.1 helix-turn-helix domain-containing protein -
  AB520_RS01640 (AB520_01610) - 359311..359484 (+) 174 WP_000784892.1 hypothetical protein -
  AB520_RS01645 (AB520_01615) - 359451..359654 (+) 204 WP_001231376.1 hypothetical protein -
  AB520_RS01650 (AB520_01620) - 359656..360039 (+) 384 WP_000403837.1 hypothetical protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18539.12 Da        Isoelectric Point: 4.7305

>NTDB_id=171071 AB520_RS01605 WP_000934799.1 354854..355357(+) (ssbA) [Staphylococcus aureus strain CFSAN007847]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=171071 AB520_RS01605 WP_000934799.1 354854..355357(+) (ssbA) [Staphylococcus aureus strain CFSAN007847]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCACAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5XGT
  PDB 7YM1
  PDB 8GW5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365

Multiple sequence alignment