Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AB478_RS01620 Genome accession   NZ_CP017679
Coordinates   352779..353282 (+) Length   167 a.a.
NCBI ID   WP_000934799.1    Uniprot ID   A0A0D1JHQ1
Organism   Staphylococcus aureus strain CFSAN007883     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 347779..358282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB478_RS01585 (AB478_01525) - 348424..348627 (+) 204 WP_000157348.1 DUF951 domain-containing protein -
  AB478_RS01590 (AB478_01530) ychF 348639..349736 (+) 1098 WP_001218732.1 redox-regulated ATPase YchF -
  AB478_RS01595 (AB478_01535) istA 349952..351244 (+) 1293 WP_000777467.1 IS21 family transposase -
  AB478_RS01600 (AB478_01540) istB 351237..351998 (+) 762 WP_001066124.1 IS21-like element helper ATPase IstB -
  AB478_RS01605 (AB478_01545) - 352054..352218 (-) 165 WP_001052486.1 hypothetical protein -
  AB478_RS01615 (AB478_01550) rpsF 352462..352758 (+) 297 WP_001261460.1 30S ribosomal protein S6 -
  AB478_RS01620 (AB478_01555) ssbA 352779..353282 (+) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  AB478_RS01625 (AB478_01560) rpsR 353334..353576 (+) 243 WP_000897044.1 30S ribosomal protein S18 -
  AB478_RS01630 (AB478_01565) - 353842..354780 (-) 939 WP_078055966.1 Abi family protein -
  AB478_RS14130 - 354819..355534 (-) 716 Protein_310 tyrosine-type recombinase/integrase -
  AB478_RS01640 (AB478_01575) selX 355740..356351 (+) 612 WP_000473142.1 staphylococcal enterotoxin-like toxin X -
  AB478_RS01645 (AB478_01580) - 356720..357088 (+) 369 WP_000849172.1 YxeA family protein -
  AB478_RS01650 (AB478_01585) - 357269..357841 (+) 573 WP_000769719.1 PepSY domain-containing protein -
  AB478_RS01655 (AB478_01590) - 357979..358242 (-) 264 WP_001055897.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18539.12 Da        Isoelectric Point: 4.7305

>NTDB_id=170803 AB478_RS01620 WP_000934799.1 352779..353282(+) (ssbA) [Staphylococcus aureus strain CFSAN007883]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=170803 AB478_RS01620 WP_000934799.1 352779..353282(+) (ssbA) [Staphylococcus aureus strain CFSAN007883]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAACAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5XGT
  PDB 7YM1
  PDB 8GW5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365

Multiple sequence alignment