Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AYM39_RS07375 Genome accession   NZ_CP014360
Coordinates   1588302..1588769 (+) Length   155 a.a.
NCBI ID   WP_064021121.1    Uniprot ID   A0A172U6Q8
Organism   Methylomonas sp. DH-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1583302..1593769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYM39_RS07355 (AYM39_07345) - 1583744..1584334 (-) 591 WP_064021117.1 hypothetical protein -
  AYM39_RS07360 (AYM39_07350) - 1584335..1586209 (-) 1875 WP_064021118.1 hypothetical protein -
  AYM39_RS07365 (AYM39_07355) - 1586221..1586661 (-) 441 WP_064021119.1 putative lipoprotein -
  AYM39_RS07370 (AYM39_07360) - 1586916..1588271 (+) 1356 WP_064021120.1 MFS transporter -
  AYM39_RS07375 (AYM39_07365) ssb 1588302..1588769 (+) 468 WP_064021121.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17262.14 Da        Isoelectric Point: 5.8024

>NTDB_id=170657 AYM39_RS07375 WP_064021121.1 1588302..1588769(+) (ssb) [Methylomonas sp. DH-1]
MLNKVMLIGRLGADPEVRYMPNGDAITNITLATSRRWRDKQTGERKEETEWHRVVFYRGLAKIAGEYLKKGSQAYIEGRI
RTRKWQGQDGQDRYTTEILADEMHMLDSRSGGTASYADSNTPAPSAYDNRPAGGAASPAPSGPAAYDDFDDDIPF

Nucleotide


Download         Length: 468 bp        

>NTDB_id=170657 AYM39_RS07375 WP_064021121.1 1588302..1588769(+) (ssb) [Methylomonas sp. DH-1]
ATGCTGAACAAAGTTATGCTGATCGGCCGCCTCGGCGCCGATCCGGAAGTACGTTATATGCCGAATGGTGATGCGATTAC
CAATATTACTCTGGCAACCAGTCGTAGGTGGAGAGACAAACAGACTGGTGAGCGCAAGGAAGAAACCGAATGGCACCGTG
TTGTTTTTTATCGCGGACTAGCGAAAATCGCCGGCGAATATCTGAAAAAAGGTAGCCAGGCTTACATCGAAGGTCGGATT
CGTACTCGGAAATGGCAAGGACAAGATGGACAGGATCGCTATACCACTGAAATTCTGGCTGATGAAATGCATATGCTGGA
TAGCCGTAGCGGCGGTACCGCCAGCTACGCCGACAGCAACACGCCGGCGCCGAGCGCCTACGACAACCGTCCGGCCGGCG
GTGCCGCCAGCCCGGCTCCATCCGGCCCGGCCGCTTACGACGATTTCGACGACGATATTCCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A172U6Q8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.907

100

0.587
  ssb Glaesserella parasuis strain SC1401

49.718

100

0.568
  ssb Neisseria meningitidis MC58

49.425

100

0.555
  ssb Neisseria gonorrhoeae MS11

48.851

100

0.548

Multiple sequence alignment