Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   GT3570_RS17065 Genome accession   NZ_CP014335
Coordinates   3389812..3390306 (-) Length   164 a.a.
NCBI ID   WP_062899075.1    Uniprot ID   -
Organism   Geobacillus thermoleovorans strain KCTC 3570     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3384812..3395306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GT3570_RS17045 (GT3570_17045) rplI 3385947..3386396 (-) 450 WP_011232941.1 50S ribosomal protein L9 -
  GT3570_RS17050 (GT3570_17050) - 3386393..3388369 (-) 1977 WP_013146700.1 DHH family phosphoesterase -
  GT3570_RS17055 (GT3570_17055) - 3388413..3389342 (-) 930 WP_062899074.1 YybS family protein -
  GT3570_RS17060 (GT3570_17060) rpsR 3389478..3389714 (-) 237 WP_008880812.1 30S ribosomal protein S18 -
  GT3570_RS17065 (GT3570_17065) ssbA 3389812..3390306 (-) 495 WP_062899075.1 single-stranded DNA-binding protein Machinery gene
  GT3570_RS17070 (GT3570_17070) rpsF 3390337..3390624 (-) 288 WP_011232945.1 30S ribosomal protein S6 -
  GT3570_RS17075 (GT3570_17075) ychF 3390839..3391939 (-) 1101 WP_011232946.1 redox-regulated ATPase YchF -
  GT3570_RS17080 (GT3570_17080) - 3392179..3394200 (-) 2022 WP_014197030.1 molybdopterin-dependent oxidoreductase -
  GT3570_RS17085 (GT3570_17085) - 3394257..3394454 (-) 198 WP_062899076.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18396.26 Da        Isoelectric Point: 4.5787

>NTDB_id=170428 GT3570_RS17065 WP_062899075.1 3389812..3390306(-) (ssbA) [Geobacillus thermoleovorans strain KCTC 3570]
MINRVILVGRLTRDPELRYTPSGVAVATFTLAVNRPFTNQQGERETDFIQCVVWRRQAENVANFLKKGSLAGVDGRLQTR
SYENQEGRRVYVTEVVADSVQFLEPKGTSEQRGATAGGYYGDPFPFGQDQNHQYPNEKGFGRIDDDPFANDGQSIDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=170428 GT3570_RS17065 WP_062899075.1 3389812..3390306(-) (ssbA) [Geobacillus thermoleovorans strain KCTC 3570]
ATGATTAACCGCGTCATTTTGGTCGGCAGGTTAACGAGAGATCCGGAGTTGCGTTACACTCCAAGCGGAGTGGCTGTTGC
CACGTTTACGCTCGCGGTCAACCGTCCGTTTACAAATCAGCAGGGCGAGCGGGAAACGGATTTTATTCAATGTGTCGTTT
GGCGCCGCCAGGCGGAAAACGTCGCCAACTTTTTGAAAAAGGGGAGCTTGGCTGGTGTCGATGGCCGACTGCAAACCCGC
AGCTATGAAAATCAAGAAGGTCGGCGCGTGTACGTGACGGAAGTGGTGGCTGATAGCGTCCAATTTCTTGAGCCGAAAGG
AACGAGCGAGCAGCGAGGGGCAACAGCAGGCGGCTACTATGGGGATCCATTCCCATTCGGGCAAGATCAGAACCACCAAT
ATCCGAACGAAAAAGGGTTTGGCCGCATCGATGACGATCCTTTCGCCAATGACGGCCAGTCGATCGATATTTCTGATGAT
GATTTGCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

67.241

100

0.713
  ssb Latilactobacillus sakei subsp. sakei 23K

60.588

100

0.628
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

64.634

0.409
  ssb Vibrio cholerae strain A1552

35.393

100

0.384

Multiple sequence alignment