Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BKM66_RS04500 Genome accession   NZ_CP017666
Coordinates   907684..908364 (+) Length   226 a.a.
NCBI ID   WP_002935253.1    Uniprot ID   Q83VP0
Organism   Streptococcus suis strain 0061     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 902684..913364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKM66_RS04485 (BKM66_04385) - 903197..904180 (-) 984 WP_002940816.1 L-lactate dehydrogenase -
  BKM66_RS04490 (BKM66_04390) gyrA 904369..906813 (+) 2445 WP_024402193.1 DNA gyrase subunit A -
  BKM66_RS04495 (BKM66_04395) - 906820..907569 (+) 750 WP_024385286.1 class A sortase -
  BKM66_RS04500 (BKM66_04400) radC 907684..908364 (+) 681 WP_002935253.1 DNA repair protein RadC Machinery gene
  BKM66_RS04505 (BKM66_04405) - 908361..909052 (-) 692 Protein_822 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  BKM66_RS04510 (BKM66_04410) - 909056..909694 (-) 639 WP_002935251.1 redox-sensing transcriptional repressor Rex -
  BKM66_RS04515 (BKM66_04415) - 909829..910032 (-) 204 WP_024378702.1 DUF4649 family protein -
  BKM66_RS04520 (BKM66_04420) - 910034..910378 (-) 345 WP_024385282.1 DUF1831 domain-containing protein -
  BKM66_RS04525 (BKM66_04425) - 910380..911495 (-) 1116 WP_105183854.1 cysteine desulfurase family protein -
  BKM66_RS04530 (BKM66_04430) - 911507..912484 (-) 978 WP_012775438.1 ribose-phosphate diphosphokinase -
  BKM66_RS04535 (BKM66_04435) - 912629..913195 (-) 567 WP_105183855.1 CYTH domain-containing protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25766.97 Da        Isoelectric Point: 7.4771

>NTDB_id=170334 BKM66_RS04500 WP_002935253.1 907684..908364(+) (radC) [Streptococcus suis strain 0061]
MYQIEFKEEAILPRERLVEVGAERLSNQELLAIFIRTGTKKEPVSILSNKLLNRLESLAALRELSIEELQSLTGIGRVKA
IEIKAMIELGKRINQSELLLNERILGSEKLGRKMIHEIGHKKQEHLVALYLNTQNQIISQKTIFIGSVNRSIAEPREILH
YAVKCMATSIIIVHNHPSGSVQPSRNDLLFTENLKESCEKLGLVLLDHLIVGNKDYYSFREESELF

Nucleotide


Download         Length: 681 bp        

>NTDB_id=170334 BKM66_RS04500 WP_002935253.1 907684..908364(+) (radC) [Streptococcus suis strain 0061]
ATGTATCAAATTGAATTTAAAGAAGAGGCCATTCTACCTAGAGAACGTTTAGTAGAAGTTGGAGCTGAGCGTCTCAGTAA
TCAGGAATTACTAGCAATTTTTATTAGAACTGGGACAAAAAAAGAACCTGTTTCAATTCTCTCCAATAAATTATTGAATC
GTTTGGAGAGTTTAGCGGCTCTAAGAGAACTATCAATTGAAGAATTGCAAAGTTTGACTGGAATTGGGCGCGTCAAGGCG
ATTGAAATTAAGGCTATGATTGAACTTGGAAAACGTATCAATCAATCAGAGCTACTCTTAAATGAGAGAATTTTGGGAAG
TGAGAAGTTGGGACGTAAGATGATTCATGAAATCGGGCATAAGAAGCAGGAGCATCTTGTTGCACTTTATCTCAATACAC
AGAACCAGATTATCAGTCAAAAAACGATTTTTATTGGGAGTGTTAATCGTAGCATTGCAGAACCACGTGAAATTTTGCAT
TACGCAGTAAAATGTATGGCAACATCGATTATCATCGTTCACAACCACCCGTCGGGTTCAGTACAACCTAGTAGGAATGA
TTTACTATTTACGGAGAATTTAAAAGAGTCCTGCGAAAAGCTAGGACTGGTATTATTAGATCATTTAATTGTTGGAAATA
AGGATTACTATTCTTTTAGAGAAGAAAGTGAGTTATTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(108-222)

UPF0758 N-terminal (UPF0758_N)

(13-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q83VP0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus gordonii str. Challis substr. CH1

65.333

99.558

0.65
  radC Streptococcus pneumoniae TIGR4

63.717

100

0.637
  radC Streptococcus pneumoniae R6

63.274

100

0.633
  radC Streptococcus pneumoniae D39

63.274

100

0.633
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

50.463

95.575

0.482