Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | AVL55_RS00960 | Genome accession | NZ_CP014323 |
| Coordinates | 212147..212731 (+) | Length | 194 a.a. |
| NCBI ID | WP_014947881.1 | Uniprot ID | A0AB32ZTF8 |
| Organism | Alteromonas macleodii strain D7 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 207147..217731
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AVL55_RS00945 (AVL55_00945) | - | 207784..208839 (+) | 1056 | WP_061093965.1 | UDP-glucose--hexose-1-phosphate uridylyltransferase | - |
| AVL55_RS00950 (AVL55_00950) | galK | 208832..209974 (+) | 1143 | WP_061093966.1 | galactokinase | - |
| AVL55_RS00955 (AVL55_00955) | - | 210317..211879 (+) | 1563 | WP_061093967.1 | sodium/sugar symporter | - |
| AVL55_RS00960 (AVL55_00960) | ssb | 212147..212731 (+) | 585 | WP_014947881.1 | single-stranded DNA-binding protein | Machinery gene |
| AVL55_RS00965 (AVL55_00965) | - | 212875..214089 (+) | 1215 | WP_061093968.1 | tyrosine-type recombinase/integrase | - |
| AVL55_RS00975 (AVL55_00975) | hxsD | 214512..214784 (+) | 273 | WP_061093970.1 | His-Xaa-Ser system protein HxsD | - |
| AVL55_RS00980 (AVL55_00980) | hxsB | 214781..216184 (+) | 1404 | WP_061093971.1 | His-Xaa-Ser system radical SAM maturase HxsB | - |
| AVL55_RS00985 (AVL55_00985) | hxsC | 216177..217277 (+) | 1101 | WP_061093972.1 | His-Xaa-Ser system radical SAM maturase HxsC | - |
Sequence
Protein
Download Length: 194 a.a. Molecular weight: 21128.03 Da Isoelectric Point: 4.9658
>NTDB_id=170317 AVL55_RS00960 WP_014947881.1 212147..212731(+) (ssb) [Alteromonas macleodii strain D7]
MATKGVNKVILVGNLGNDPEVRYMPNGNAVANLSLATSESWKDQQGQVQERTEWHRLTMYRRLAEIAGEYLKKGSQIYVE
GKLQTRKWQDQQGQDKYTTEIIVDQMQMLGGRGGEGGGGNGGYQRPQNNQGGYNQAPAQGGYNQAPQQGGGQQGGYNSNQ
GGGYNQAPQGGNQGQPKNPPMAEPDFDFDDDIPF
MATKGVNKVILVGNLGNDPEVRYMPNGNAVANLSLATSESWKDQQGQVQERTEWHRLTMYRRLAEIAGEYLKKGSQIYVE
GKLQTRKWQDQQGQDKYTTEIIVDQMQMLGGRGGEGGGGNGGYQRPQNNQGGYNQAPAQGGYNQAPQQGGGQQGGYNSNQ
GGGYNQAPQGGNQGQPKNPPMAEPDFDFDDDIPF
Nucleotide
Download Length: 585 bp
>NTDB_id=170317 AVL55_RS00960 WP_014947881.1 212147..212731(+) (ssb) [Alteromonas macleodii strain D7]
ATGGCAACGAAAGGCGTTAATAAGGTTATTCTTGTTGGAAACCTTGGCAATGATCCTGAAGTTAGATATATGCCTAACGG
AAACGCCGTTGCGAACTTAAGCCTAGCAACTAGCGAAAGCTGGAAAGACCAACAGGGTCAGGTTCAAGAGCGCACTGAGT
GGCACCGCCTTACAATGTACCGTCGCTTAGCAGAAATTGCCGGAGAGTACCTGAAAAAGGGCTCGCAAATTTATGTTGAA
GGTAAATTGCAAACGCGTAAGTGGCAAGATCAGCAAGGCCAAGATAAATACACCACTGAAATTATCGTAGACCAAATGCA
AATGCTTGGCGGTCGCGGCGGTGAAGGCGGTGGTGGTAACGGTGGTTACCAACGTCCTCAGAACAACCAAGGTGGTTACA
ACCAGGCGCCTGCACAAGGCGGTTATAACCAAGCGCCACAGCAAGGTGGTGGTCAGCAGGGCGGCTACAACTCAAACCAA
GGTGGTGGCTACAATCAAGCGCCTCAGGGTGGCAATCAAGGTCAGCCAAAGAACCCACCAATGGCTGAGCCAGATTTTGA
CTTCGACGACGACATTCCGTTTTAA
ATGGCAACGAAAGGCGTTAATAAGGTTATTCTTGTTGGAAACCTTGGCAATGATCCTGAAGTTAGATATATGCCTAACGG
AAACGCCGTTGCGAACTTAAGCCTAGCAACTAGCGAAAGCTGGAAAGACCAACAGGGTCAGGTTCAAGAGCGCACTGAGT
GGCACCGCCTTACAATGTACCGTCGCTTAGCAGAAATTGCCGGAGAGTACCTGAAAAAGGGCTCGCAAATTTATGTTGAA
GGTAAATTGCAAACGCGTAAGTGGCAAGATCAGCAAGGCCAAGATAAATACACCACTGAAATTATCGTAGACCAAATGCA
AATGCTTGGCGGTCGCGGCGGTGAAGGCGGTGGTGGTAACGGTGGTTACCAACGTCCTCAGAACAACCAAGGTGGTTACA
ACCAGGCGCCTGCACAAGGCGGTTATAACCAAGCGCCACAGCAAGGTGGTGGTCAGCAGGGCGGCTACAACTCAAACCAA
GGTGGTGGCTACAATCAAGCGCCTCAGGGTGGCAATCAAGGTCAGCCAAAGAACCCACCAATGGCTGAGCCAGATTTTGA
CTTCGACGACGACATTCCGTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
56 |
100 |
0.577 |
| ssb | Vibrio cholerae strain A1552 |
54.5 |
100 |
0.562 |
| ssb | Neisseria meningitidis MC58 |
46.354 |
98.969 |
0.459 |
| ssb | Neisseria gonorrhoeae MS11 |
46.354 |
98.969 |
0.459 |