Detailed information NTG0170293

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: BKM66_RS00345
• Genome accession: NZ_CP017666
• Coordinates: 57252..58253 (+)
• Length: 333 a.a.
• NCBI ID: WP_105183594.1
• Uniprot ID: -
• Organism: Streptococcus suis strain 0061
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 52252..63253

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BKM66_RS00325 (BKM66_00320)	-	53816..54640 (+)	825	WP_105183595.1	ABC transporter ATP-binding protein	-
BKM66_RS00330 (BKM66_00325)	-	54633..55376 (+)	744	WP_105183575.1	ABC transporter permease	-
BKM66_RS10340	-	55428..55601 (+)	174	WP_192874037.1	hypothetical protein	-
BKM66_RS00335 (BKM66_00330)	-	55727..56359 (+)	633	WP_105183574.1	MerR family transcriptional regulator	-
BKM66_RS00340 (BKM66_00335)	-	56517..56999 (+)	483	WP_105183573.1	hypothetical protein	-
BKM66_RS00345 (BKM66_00340)	ruvB	57252..58253 (+)	1002	WP_105183594.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
BKM66_RS00350 (BKM66_00345)	-	58321..58944 (+)	624	WP_044676020.1	HAD-IA family hydrolase	-
BKM66_RS00355 (BKM66_00350)	-	58856..60411 (-)	1556	Protein_50	IS1182 family transposase	-
BKM66_RS00360 (BKM66_00355)	-	60482..61953 (-)	1472	Protein_51	IS1182 family transposase	-
BKM66_RS00365 (BKM66_00360)	comR	62164..63063 (+)	900	WP_105184195.1	helix-turn-helix domain-containing protein	Regulator

Sequence

Protein

• Length: 333 a.a.
• Molecular weight: 37669.19 Da
• Isoelectric Point: 4.4708

>NTDB_id=170293 BKM66_RS00345 WP_105183594.1 57252..58253(+) (ruvB) [Streptococcus suis strain 0061]
MTNRILDMEQMQDEEYVERTLRPQKLNEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVN
IKQTSGPVIEKAGDLVALLNDLEPGDVLFIDEIHRMPMAVEEILYSAMEDFYIDIMIGAGEASRSVHLELPPFTLIGATT
RAGMLSNPLRARFGITGHMEYYELADLTEIVERTADIFEMEITHEAAIELARRSRGTPRIANRLLKRVRDFAQIMGDGLI
DDTITDRALTMLDVDREGLDYVDQKILRTMIEMYGGGPVGLNTLSVNIAEERETVEDMYEPYLIQQGFLMRTRTGRVATA
KAYEHLGYPYTEK

Nucleotide

• Length: 1002 bp

>NTDB_id=170293 BKM66_RS00345 WP_105183594.1 57252..58253(+) (ruvB) [Streptococcus suis strain 0061]
ATGACAAATCGAATTTTAGACATGGAACAAATGCAGGACGAGGAGTACGTTGAGCGTACCCTGCGTCCGCAGAAATTAAA
TGAATACATCGGTCAGGACAAGGTCAAGGACCAGCTGAAAATCTTTATCGAGGCAGCCAAGCTCCGTGATGAAGCCTTGG
ACCATACCCTTCTGTTTGGCCCTCCGGGTTTGGGTAAAACCACCATGGCCTTTGTCATTGCCAACGAACTAGGCGTCAAC
ATTAAGCAGACCAGTGGTCCTGTCATTGAAAAGGCAGGTGACTTGGTGGCCCTTCTCAACGACTTGGAGCCTGGCGACGT
CCTTTTTATCGATGAAATCCACCGTATGCCTATGGCGGTCGAGGAGATTCTTTACTCTGCAATGGAAGACTTCTACATCG
ACATCATGATTGGGGCAGGCGAGGCCAGTCGCTCCGTGCACTTGGAGTTGCCACCTTTTACCCTGATTGGAGCAACCACT
CGTGCGGGTATGCTGTCCAATCCTCTGCGGGCCCGTTTTGGTATTACCGGTCATATGGAGTATTATGAATTGGCTGATTT
GACGGAGATTGTCGAGCGGACAGCGGACATCTTTGAGATGGAGATTACCCATGAAGCTGCTATTGAGCTGGCTCGTCGGT
CTCGTGGAACTCCTCGTATCGCCAACCGTCTGCTCAAGCGGGTGAGGGATTTCGCACAGATTATGGGCGACGGTCTGATT
GATGACACTATTACGGACAGGGCCTTGACTATGCTGGATGTGGACCGAGAGGGGCTGGACTATGTGGACCAGAAGATTCT
TCGGACTATGATTGAGATGTACGGTGGCGGTCCCGTCGGCCTCAACACCCTATCGGTCAATATTGCCGAGGAGCGTGAGA
CGGTGGAGGACATGTACGAACCTTACCTGATTCAGCAGGGCTTCCTTATGCGGACACGGACGGGGCGGGTCGCGACAGCT
AAGGCTTACGAGCACTTGGGATATCCCTATACGGAAAAATAA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (257-326)

• RuvB AAA lid domain (AAA_lid_4) (182-255)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (21-179)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	90.332	99.399	0.898
ruvB	Streptococcus pneumoniae R6	90.03	99.399	0.895
ruvB	Streptococcus pneumoniae D39	90.03	99.399	0.895
ruvB	Bacillus subtilis subsp. subtilis str. 168	58.896	97.898	0.577
ruvB	Helicobacter pylori 26695	51.064	98.799	0.505
ruvB	Synechocystis sp. PCC 6803	50.479	93.994	0.474