Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AXW83_RS03075 Genome accession   NZ_CP014301
Coordinates   639564..640103 (+) Length   179 a.a.
NCBI ID   WP_066610513.1    Uniprot ID   A0A126NR32
Organism   Bosea sp. PAMC 26642 strain PAMC26642     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 634564..645103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXW83_RS03065 (AXW83_03065) uvrA 634710..637613 (-) 2904 WP_066619721.1 excinuclease ABC subunit UvrA -
  AXW83_RS03070 (AXW83_03070) - 637989..639218 (+) 1230 WP_066619723.1 MFS transporter -
  AXW83_RS03075 (AXW83_03075) ssb 639564..640103 (+) 540 WP_066610513.1 single-stranded DNA-binding protein Machinery gene
  AXW83_RS03080 (AXW83_03080) - 640290..641876 (+) 1587 WP_066610514.1 ABC transporter substrate-binding protein -
  AXW83_RS03085 (AXW83_03085) - 641935..642405 (-) 471 WP_066619730.1 VOC family protein -
  AXW83_RS03090 (AXW83_03090) - 642617..643732 (+) 1116 WP_066619732.1 M20 family metallopeptidase -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19259.32 Da        Isoelectric Point: 7.2052

>NTDB_id=170217 AXW83_RS03075 WP_066610513.1 639564..640103(+) (ssb) [Bosea sp. PAMC 26642 strain PAMC26642]
MAGSVNKVIIVGNLGKDPEVRRLNSGEPVVSLRIATSENWRDKQSGERKEKTEWHQVVIFNENLAKVAEQYLKKGSKVYI
EGQLQTRKWQDQSGVEKYTTEIVLQRYRGELTLLDSRGQGGSDEYGEGGGAMEDRSGGGSFGRSGPMGGGGSAPRQPAMA
GGGGGGRSSSTHLDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=170217 AXW83_RS03075 WP_066610513.1 639564..640103(+) (ssb) [Bosea sp. PAMC 26642 strain PAMC26642]
ATGGCTGGTAGCGTCAATAAGGTCATCATCGTCGGCAATCTGGGCAAGGATCCCGAAGTCCGGCGGCTGAATTCCGGCGA
GCCGGTCGTCTCGCTGCGCATCGCGACCTCCGAGAACTGGCGCGACAAGCAGTCGGGCGAGCGCAAGGAGAAGACCGAAT
GGCATCAGGTGGTGATCTTCAATGAGAACCTGGCCAAGGTCGCCGAGCAATATCTGAAGAAGGGCTCGAAGGTTTATATC
GAGGGCCAGCTCCAGACCCGCAAATGGCAGGACCAGTCCGGCGTCGAGAAATACACCACCGAGATCGTGCTGCAGCGCTA
TCGCGGCGAGCTGACGCTGCTCGACAGCCGCGGGCAGGGCGGTTCCGACGAGTATGGCGAAGGCGGCGGGGCGATGGAGG
ATCGCTCCGGCGGCGGCTCCTTCGGCCGCTCGGGTCCGATGGGCGGTGGCGGTAGCGCCCCGCGCCAGCCGGCGATGGCA
GGCGGCGGCGGTGGCGGTCGCTCCTCGTCGACCCATCTCGACGACGACATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A126NR32

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.387

100

0.503
  ssb Glaesserella parasuis strain SC1401

47.34

100

0.497
  ssb Neisseria meningitidis MC58

39.247

100

0.408
  ssb Neisseria gonorrhoeae MS11

38.71

100

0.402

Multiple sequence alignment