Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AXW78_RS19885 Genome accession   NZ_CP014282
Coordinates   4001067..4002806 (-) Length   579 a.a.
NCBI ID   WP_000947761.1    Uniprot ID   A0A9W7UY90
Organism   Bacillus thuringiensis strain Bt185     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3996067..4007806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXW78_RS19855 (AXW78_19855) - 3996308..3996541 (+) 234 WP_001190210.1 DUF2627 domain-containing protein -
  AXW78_RS19860 (AXW78_19860) - 3996591..3997319 (-) 729 WP_000172585.1 glycerophosphodiester phosphodiesterase -
  AXW78_RS19865 (AXW78_19865) - 3997370..3997516 (+) 147 WP_000803575.1 YycC family protein -
  AXW78_RS19870 (AXW78_19870) - 3997757..3998312 (-) 556 Protein_3945 PRK06770 family protein -
  AXW78_RS19875 (AXW78_19875) spo0A 3998565..3999359 (-) 795 WP_011110369.1 sporulation transcription factor Spo0A Regulator
  AXW78_RS19880 (AXW78_19880) spoIVB 3999650..4000948 (-) 1299 WP_002164177.1 SpoIVB peptidase -
  AXW78_RS19885 (AXW78_19885) recN 4001067..4002806 (-) 1740 WP_000947761.1 DNA repair protein RecN Machinery gene
  AXW78_RS19890 (AXW78_19890) argR 4003071..4003520 (-) 450 WP_001032581.1 arginine repressor ArgR -
  AXW78_RS19895 (AXW78_19895) - 4003663..4004502 (-) 840 WP_000111872.1 TlyA family RNA methyltransferase -
  AXW78_RS19900 (AXW78_19900) dxs 4004506..4006398 (-) 1893 WP_061884562.1 1-deoxy-D-xylulose-5-phosphate synthase -
  AXW78_RS19905 (AXW78_19905) ispA 4006701..4007591 (-) 891 WP_000150373.1 (2E,6E)-farnesyl diphosphate synthase -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65803.92 Da        Isoelectric Point: 4.8627

>NTDB_id=170199 AXW78_RS19885 WP_000947761.1 4001067..4002806(-) (recN) [Bacillus thuringiensis strain Bt185]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDEKHPCIEK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSILKEIGKTLVDIHGQHETQDLMNEERHLFMLDHFDGDRIVKQL
DIYQNVYADYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEIRKADLKLDEENELTEERLQISNFEKIYKALGDAYRSLSA
DGQGLDNVRSAMGQMESITHLDEVYQENHDSIANSYYLLEEVAYQLREKLDMMEYDPNRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEKEIFTIENKDVHIETTKKQLKELESVILKEATLLSNMRHELAEHLTNAIHQELKELYMEKTKFEVRIM
KREGNAEEPLVEGAPVRLTADGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLTMEDKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=170199 AXW78_RS19885 WP_000947761.1 4001067..4002806(-) (recN) [Bacillus thuringiensis strain Bt185]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAAGCATTAAATATTTCTTTTCAAAAAGGTTTAACGGTTTT
AAGCGGTGAAACAGGGGCCGGAAAATCGATTATTATTGATGCAATTAGTTTACTTGTAGGTGGCCGTGGGTCAGCAGAAT
TTGTTCGATATGGAACAGAAAAGGCTGAGATTGAAGGGTTATTTTATGTTGAAGATGAGAAGCATCCATGTATTGAAAAG
GCAGAAGAGTTAGATATAGAAATAGAAGATGGCATGATTATTTTAAAGCGTGATATTGCTGCGAACGGGAAGAGTGTATG
TCGTGTAAATGGGAAGCTTGTTACACTTAGCATATTAAAAGAAATTGGGAAAACACTTGTTGATATTCATGGACAGCATG
AAACGCAAGATTTAATGAATGAAGAACGACATCTGTTTATGCTTGATCATTTTGATGGGGATCGAATCGTTAAACAATTA
GATATATATCAAAACGTATACGCTGACTATGAAAAATTAAAAAAACAATTGAAATCGTTAAGTGAAAATGAACAACAAAT
GGCACATCGCTTAGATTTAATTCAGTTTCAGCATGAAGAAATTCGCAAGGCGGATTTAAAGCTGGATGAAGAAAATGAAT
TAACTGAGGAACGATTACAAATTTCTAATTTTGAAAAGATTTATAAAGCGTTAGGTGATGCATATCGTTCGTTAAGTGCC
GACGGACAAGGATTAGATAATGTAAGAAGTGCAATGGGGCAAATGGAAAGTATTACACATTTAGATGAAGTGTATCAAGA
GAATCATGATTCAATTGCAAATAGTTATTACTTATTAGAAGAGGTTGCCTATCAACTGAGAGAAAAGCTCGATATGATGG
AATATGATCCAAATCGTTTAGATGAAATCGAAACACGTTTGAATGAAATTCGTATGCTAAAGAGAAAATATGGAAATACT
GTAGAAGAGATTTTAGCGTATGCTGATAAAATTGAAAAGGAAATTTTTACGATTGAAAATAAAGACGTTCATATTGAAAC
GACGAAGAAACAGTTGAAGGAATTAGAAAGTGTTATTCTGAAAGAAGCAACGTTGTTAAGTAATATGCGTCATGAGCTTG
CAGAACATCTTACAAATGCAATTCATCAGGAATTAAAAGAATTATATATGGAAAAAACGAAATTTGAAGTGAGAATTATG
AAGAGAGAAGGAAATGCAGAAGAGCCCCTTGTGGAAGGTGCACCGGTAAGACTTACGGCGGACGGTTACGATCATGTGGA
ATTTTATATTTCAACGAACCCAGGAGAGCCGCTAAAGCCACTTTCAAAGGTTGCTTCTGGAGGAGAGTTATCTCGTATCA
TTTTAGCTTTAAAAAGCATTTTTTCTAAGCATCAAGGGGTTGCATCTGTTATTTTTGATGAAGTGGATACGGGTGTAAGT
GGCCGGGTCGCACAGGCTATTGCAGAAAAAATTTATCGAGTATCAGTAAACTCGCAAGTACTTTGTATTACGCACTTACC
TCAAGTAGCTTCAATGGCGGATTCGCATTTATTTATTCGAAAACAAGTAGCGAATGATCGGACAATTACTTCGGTTACTG
TTTTAACTATGGAGGATAAAGTAACAGAAATAGCTCGAATGATTTCTGGTGTGGAAATTACAGATTTAACGACAGAGCAT
GCGAAAGAATTACTTACGCAAGCGCATCATTTTAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.276

100

0.603

Multiple sequence alignment