Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AXG94_RS12255 Genome accession   NZ_CP014262
Coordinates   2853765..2854280 (-) Length   171 a.a.
NCBI ID   WP_024778338.1    Uniprot ID   A0A0B1YWX5
Organism   Pseudomonas corrugata strain RM1-1-4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2848765..2859280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXG94_RS12230 (AXG94_12215) - 2848868..2849869 (+) 1002 WP_024778343.1 lysylphosphatidylglycerol synthase domain-containing protein -
  AXG94_RS12235 (AXG94_12220) - 2849978..2850736 (-) 759 WP_069018342.1 alpha/beta hydrolase family protein -
  AXG94_RS12240 (AXG94_12225) - 2850726..2851835 (-) 1110 WP_024778341.1 DUF3182 family protein -
  AXG94_RS12245 (AXG94_12230) - 2852045..2853040 (-) 996 WP_024778340.1 GlxA family transcriptional regulator -
  AXG94_RS12250 (AXG94_12235) - 2853136..2853693 (+) 558 WP_024778339.1 cysteine hydrolase family protein -
  AXG94_RS12255 (AXG94_12240) ssb 2853765..2854280 (-) 516 WP_024778338.1 single-stranded DNA-binding protein Machinery gene
  AXG94_RS12260 (AXG94_12245) - 2854290..2855687 (-) 1398 WP_024778337.1 MFS transporter -
  AXG94_RS12265 (AXG94_12250) uvrA 2855867..2858701 (+) 2835 WP_024778336.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19113.27 Da        Isoelectric Point: 5.9455

>NTDB_id=169937 AXG94_RS12255 WP_024778338.1 2853765..2854280(-) (ssb) [Pseudomonas corrugata strain RM1-1-4]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQQGGNNYQQSAPRQQAPRPQSAPQPQRERPAPQQAAPQPAP
DFDSFDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=169937 AXG94_RS12255 WP_024778338.1 2853765..2854280(-) (ssb) [Pseudomonas corrugata strain RM1-1-4]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACGTGCGGCCAGGATCCCGAGGTTCGCTACCTGCCTAACGGCAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAGCAGTGGACCGACAAGCAGACCGGCCAGAAGGTCGAGAAGACCGAAT
GGCACCGCGTGTCGATGTTCGGCAAAGTGGCTGAGATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTTTACATCGAA
GGCAAGCTGCAGACGCGTGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACTGAAATCGTGGTCGACATGCAGGGTAC
CATGCAACTGTTGGGCGGCCGTCCACAGGGTGACCAGCAGCAGGGTGGCAACAACTACCAGCAGTCGGCTCCACGTCAGC
AGGCACCGCGCCCGCAATCGGCGCCGCAGCCACAGCGCGAGCGCCCGGCCCCACAACAGGCCGCGCCGCAACCGGCTCCG
GATTTCGACAGCTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B1YWX5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.593

100

0.602
  ssb Glaesserella parasuis strain SC1401

48.619

100

0.515
  ssb Neisseria meningitidis MC58

47.486

100

0.497
  ssb Neisseria gonorrhoeae MS11

46.667

100

0.491

Multiple sequence alignment