Detailed information NTG0169768

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: BKD09_RS44835
• Genome accession: NZ_CP017637
• Coordinates: 9508523..9509575 (-)
• Length: 350 a.a.
• NCBI ID: WP_071916640.1
• Uniprot ID: -
• Organism: Bradyrhizobium japonicum strain J5
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 9503523..9514575

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BKD09_RS44815 (BKD09_44815)	-	9503905..9504114 (+)	210	WP_035708418.1	hypothetical protein	-
BKD09_RS44825 (BKD09_44825)	-	9505621..9507324 (+)	1704	WP_035708423.1	recombinase family protein	-
BKD09_RS54740	-	9507297..9507386 (-)	90	Protein_8936	acyl-CoA thioester hydrolase	-
BKD09_RS44830 (BKD09_44830)	-	9507456..9508370 (-)	915	WP_071916639.1	metallophosphoesterase	-
BKD09_RS44835 (BKD09_44835)	ruvB	9508523..9509575 (-)	1053	WP_071916640.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
BKD09_RS44840 (BKD09_44840)	-	9509572..9510102 (-)	531	WP_071916641.1	hypothetical protein	-
BKD09_RS44845 (BKD09_44845)	ruvA	9510099..9510716 (-)	618	WP_063981036.1	Holliday junction branch migration protein RuvA	-
BKD09_RS44850 (BKD09_44850)	ruvC	9510713..9511240 (-)	528	WP_039156321.1	crossover junction endodeoxyribonuclease RuvC	-
BKD09_RS44855 (BKD09_44855)	-	9511476..9512222 (-)	747	WP_071916642.1	YebC/PmpR family DNA-binding transcriptional regulator	-
BKD09_RS44860 (BKD09_44860)	-	9512426..9514174 (+)	1749	WP_071916643.1	methyl-accepting chemotaxis protein	-

Sequence

Protein

• Length: 350 a.a.
• Molecular weight: 37838.01 Da
• Isoelectric Point: 5.5092

>NTDB_id=169768 BKD09_RS44835 WP_071916640.1 9508523..9509575(-) (ruvB) [Bradyrhizobium japonicum strain J5]
MTTPPRIVTPERRSDDVGDTALRPQSLSDFVGQQQARKNLSIFIEAARKRGEALDHVLFVGPPGLGKTTLAQIVAKELGV
GFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPAVEEVLYPAMEDFQLDLIIGEGPAARSVKIELSKFTLVGAT
TRAGLLTNPLRDRFGIPVRLNFYTTEELESIVTRGARVLNVGMSADGANEIARRARGTPRIAGRLLRRVRDFASAADAAS
IDRKIADHALSALEVDAAGLDAMDRRYLTTIAQNYGGGPVGVETMAAALSEPRDAIEDIIEPYLIQCGYLQRTPRGRLLT
SHAFRHLGIAEPSRDAAAQFGLFGSDESDD

Nucleotide

• Length: 1053 bp

>NTDB_id=169768 BKD09_RS44835 WP_071916640.1 9508523..9509575(-) (ruvB) [Bradyrhizobium japonicum strain J5]
ATGACCACTCCCCCACGCATCGTCACGCCCGAGCGCCGCTCCGATGACGTCGGCGACACCGCGCTACGTCCGCAATCGCT
GTCCGACTTCGTCGGCCAGCAGCAGGCGCGCAAGAACCTCTCGATCTTCATCGAGGCGGCGCGCAAGCGCGGCGAGGCGC
TGGATCACGTGCTGTTCGTAGGCCCCCCTGGCCTCGGCAAGACCACGCTGGCGCAGATCGTCGCCAAGGAGCTCGGCGTC
GGCTTTCGCGCCACCTCGGGTCCGGTGATCGCCAAGGCCGGCGATCTCGCCGCACTCCTCACCAACCTCGAAGAGCGCGA
CGTGCTCTTCATCGACGAGATCCATCGGCTCAGCCCGGCGGTGGAAGAGGTGCTCTATCCCGCGATGGAGGACTTTCAGC
TCGACCTGATCATCGGCGAGGGCCCGGCGGCACGCTCGGTGAAGATCGAGCTGTCGAAATTCACGCTCGTCGGCGCCACT
ACGCGCGCCGGCCTCCTCACCAATCCCTTGCGCGACCGCTTCGGCATCCCGGTCCGGCTCAATTTTTACACCACCGAAGA
GCTCGAAAGCATCGTCACCCGCGGCGCGCGCGTGCTCAATGTCGGCATGAGCGCCGACGGTGCCAACGAGATCGCGCGCC
GCGCCCGCGGCACGCCGCGCATCGCCGGCCGCCTGTTGCGGCGCGTGCGCGATTTCGCCTCCGCCGCCGATGCCGCCTCG
ATCGACCGCAAGATCGCCGACCACGCGCTGAGCGCGCTCGAGGTCGACGCCGCGGGCCTTGACGCCATGGACCGCCGCTA
CCTCACGACCATCGCGCAGAACTATGGCGGCGGCCCGGTCGGCGTCGAGACGATGGCCGCCGCCTTGTCCGAGCCGCGCG
ATGCGATCGAGGACATCATCGAGCCTTATCTCATTCAGTGCGGCTATCTCCAGCGCACCCCGCGCGGCCGCCTGCTCACC
TCGCACGCCTTCCGCCATCTCGGCATCGCCGAGCCCTCGCGCGATGCCGCGGCACAGTTCGGCCTGTTCGGCTCGGACGA
GAGCGATGACTGA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (22-180)

• RuvB AAA lid domain (AAA_lid_4) (183-256)

• RuvB C-terminal winged helix domain (WHD_RuvB) (258-327)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	55.891	94.571	0.529
ruvB	Streptococcus pneumoniae TIGR4	53.704	92.571	0.497
ruvB	Streptococcus pneumoniae R6	53.704	92.571	0.497
ruvB	Streptococcus pneumoniae D39	53.704	92.571	0.497
ruvB	Helicobacter pylori 26695	53.538	92.857	0.497
ruvB	Synechocystis sp. PCC 6803	50	94.286	0.471