Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   BKD09_RS34745 Genome accession   NZ_CP017637
Coordinates   7264799..7265473 (-) Length   224 a.a.
NCBI ID   WP_014496705.1    Uniprot ID   A0AAE5X3G4
Organism   Bradyrhizobium japonicum strain J5     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 7259799..7270473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKD09_RS34725 (BKD09_34725) ccmI 7260155..7261264 (-) 1110 WP_071917603.1 c-type cytochrome biogenesis protein CcmI -
  BKD09_RS34730 (BKD09_34730) - 7261396..7261665 (-) 270 WP_028149902.1 hypothetical protein -
  BKD09_RS34735 (BKD09_34735) - 7261765..7263168 (-) 1404 WP_071915616.1 hypothetical protein -
  BKD09_RS34740 (BKD09_34740) - 7263330..7264706 (-) 1377 WP_071915617.1 sensor histidine kinase -
  BKD09_RS34745 (BKD09_34745) ciaR 7264799..7265473 (-) 675 WP_014496705.1 response regulator transcription factor Regulator
  BKD09_RS53065 (BKD09_34750) - 7265709..7265864 (-) 156 WP_223153641.1 hypothetical protein -
  BKD09_RS34755 (BKD09_34755) - 7266100..7267086 (+) 987 WP_071915618.1 Ku protein -
  BKD09_RS34760 (BKD09_34760) - 7267147..7267383 (+) 237 WP_071915619.1 hypothetical protein -
  BKD09_RS34765 (BKD09_34765) - 7267533..7267760 (+) 228 WP_071915620.1 hypothetical protein -
  BKD09_RS34770 (BKD09_34770) - 7267978..7268142 (+) 165 WP_014496710.1 Flp family type IVb pilin -
  BKD09_RS34775 (BKD09_34775) - 7268493..7268927 (+) 435 WP_071915621.1 hypothetical protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25105.47 Da        Isoelectric Point: 6.1554

>NTDB_id=169757 BKD09_RS34745 WP_014496705.1 7264799..7265473(-) (ciaR) [Bradyrhizobium japonicum strain J5]
MRLLVVEDDPDLNRQLTKALTDAGYVVDRAFDGEEGHYLGDNEPYDAVVLDIGLPKKDGISVLEAWRRNGRTMPVLILTA
RDRWSDKVQGFDAGADDYVPKPFHLEEVLARIRALLRRSTGHAQSELSCGPVTLDTRTGRVSVSGNPVKMTSHEYRLLAY
LMHHSGRVVSRTELVEHLYDQDFDRDSNTIEVFVGRIRKKLDVDIIQTVRGLGYLLTPPPAPGA

Nucleotide


Download         Length: 675 bp        

>NTDB_id=169757 BKD09_RS34745 WP_014496705.1 7264799..7265473(-) (ciaR) [Bradyrhizobium japonicum strain J5]
GTGCGCCTGCTTGTTGTTGAGGACGACCCCGATCTCAATCGGCAGCTCACCAAGGCGCTGACCGACGCCGGCTACGTCGT
CGACCGTGCCTTCGACGGCGAGGAGGGGCATTATCTCGGCGATAATGAGCCCTACGATGCCGTTGTGCTCGACATCGGCC
TGCCGAAGAAGGACGGCATCTCGGTGCTGGAAGCCTGGCGCCGCAACGGCCGCACCATGCCGGTCCTGATCCTCACCGCG
CGTGACCGCTGGAGCGACAAGGTCCAGGGGTTCGATGCCGGCGCCGACGATTACGTGCCGAAGCCGTTCCATCTCGAGGA
GGTGCTGGCGCGCATCCGCGCGCTGCTGCGCCGCTCCACCGGCCATGCCCAGAGCGAATTGAGTTGCGGCCCCGTCACGC
TCGACACCAGGACCGGGCGGGTCAGCGTCTCCGGCAATCCCGTCAAGATGACCTCGCACGAATATCGGCTTCTGGCCTAC
CTGATGCACCATTCGGGGCGCGTCGTGTCCCGCACTGAGCTGGTCGAACACCTCTACGACCAGGACTTCGACCGCGACTC
CAACACCATCGAGGTCTTCGTCGGCCGCATCCGCAAGAAGCTCGACGTCGACATCATCCAGACCGTTCGCGGCCTCGGCT
ATCTCCTGACCCCGCCGCCTGCTCCCGGCGCTTGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(145-216)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AAE5X3G4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus mutans UA159

40

98.214

0.393
  ciaR Streptococcus pneumoniae Rx1

39.091

98.214

0.384
  ciaR Streptococcus pneumoniae D39

39.091

98.214

0.384
  ciaR Streptococcus pneumoniae R6

39.091

98.214

0.384
  ciaR Streptococcus pneumoniae TIGR4

39.091

98.214

0.384
  covR Lactococcus lactis subsp. lactis strain DGCC12653

36.323

99.554

0.362