Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VN23_RS13640 Genome accession   NZ_CP014222
Coordinates   3031972..3032484 (-) Length   170 a.a.
NCBI ID   WP_046352379.1    Uniprot ID   A0A120IHZ9
Organism   Janthinobacterium sp. B9-8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3026972..3037484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VN23_RS13630 (VN23_13630) - 3028783..3030195 (-) 1413 WP_052746639.1 restriction endonuclease subunit S -
  VN23_RS13635 (VN23_13635) - 3030185..3031846 (-) 1662 WP_046352378.1 class I SAM-dependent DNA methyltransferase -
  VN23_RS13640 (VN23_13640) ssb 3031972..3032484 (-) 513 WP_046352379.1 single-stranded DNA-binding protein Machinery gene
  VN23_RS13645 (VN23_13645) - 3032484..3033848 (-) 1365 WP_046352380.1 MFS transporter -
  VN23_RS13650 (VN23_13650) uvrA 3034093..3036954 (+) 2862 WP_046352381.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18655.73 Da        Isoelectric Point: 5.9204

>NTDB_id=169548 VN23_RS13640 WP_046352379.1 3031972..3032484(-) (ssb) [Janthinobacterium sp. B9-8]
MASLNKVILIGNLGKDPENRFLPSGGAVCNFSIATTESWKDKATGQKQEKTEWHNITMYNRLAEIAAQYLKKGSSVYIEG
RLQTRKWQDKTTGQDRYTTEIIADQMQMLGGRAGNSSGPADTGYDDGGLNQQPAYQQQQQASPAPARRPVPAPAAAAPKS
FDDFEDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=169548 VN23_RS13640 WP_046352379.1 3031972..3032484(-) (ssb) [Janthinobacterium sp. B9-8]
ATGGCTTCATTGAATAAAGTAATTTTGATCGGCAATTTGGGTAAAGACCCTGAAAATCGCTTTCTGCCATCGGGCGGCGC
AGTGTGCAACTTCAGCATTGCCACCACCGAAAGCTGGAAAGACAAAGCCACCGGTCAAAAGCAGGAAAAAACCGAATGGC
ACAATATCACCATGTACAACCGCCTAGCCGAAATCGCCGCGCAGTACCTGAAGAAAGGCTCATCGGTTTACATCGAAGGC
CGTCTGCAAACGCGTAAATGGCAAGATAAAACCACTGGCCAAGATCGCTACACCACCGAAATCATCGCCGACCAAATGCA
AATGCTGGGCGGGCGTGCTGGCAATAGCAGTGGCCCAGCCGATACTGGCTACGACGACGGCGGCTTAAATCAGCAGCCCG
CCTACCAGCAGCAGCAACAAGCCTCCCCAGCACCAGCTCGCCGCCCGGTACCAGCCCCGGCAGCTGCAGCGCCAAAAAGC
TTTGATGATTTTGAGGATGATATTCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A120IHZ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.723

100

0.594
  ssb Neisseria meningitidis MC58

55.556

100

0.588
  ssb Neisseria gonorrhoeae MS11

55

100

0.582
  ssb Glaesserella parasuis strain SC1401

51.913

100

0.559

Multiple sequence alignment