Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   AXA63_RS16605 Genome accession   NZ_CP014215
Coordinates   3427576..3428316 (-) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain YU-R612     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3422576..3433316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXA63_RS16585 (AXA63_16585) aroB 3423116..3424198 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  AXA63_RS16590 (AXA63_16590) aroK 3424227..3424796 (-) 570 WP_000643712.1 shikimate kinase AroK -
  AXA63_RS16595 (AXA63_16595) pilQ 3424808..3426970 (-) 2163 WP_033503048.1 type IV pilus secretin PilQ family protein Machinery gene
  AXA63_RS16600 (AXA63_16600) pilP 3427038..3427565 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  AXA63_RS16605 (AXA63_16605) pilO 3427576..3428316 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  AXA63_RS16610 (AXA63_16610) pilN 3428313..3428954 (-) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  AXA63_RS16615 (AXA63_16615) pilM 3428954..3430012 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  AXA63_RS16620 (AXA63_16620) ponA 3430175..3432730 (+) 2556 WP_060853640.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=169502 AXA63_RS16605 WP_000076101.1 3427576..3428316(-) (pilO) [Acinetobacter baumannii strain YU-R612]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=169502 AXA63_RS16605 WP_000076101.1 3427576..3428316(-) (pilO) [Acinetobacter baumannii strain YU-R612]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTGCAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGCATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683

Multiple sequence alignment