Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   AXA63_RS16610 Genome accession   NZ_CP014215
Coordinates   3428313..3428954 (-) Length   213 a.a.
NCBI ID   WP_000201227.1    Uniprot ID   A0A009HSE6
Organism   Acinetobacter baumannii strain YU-R612     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3423313..3433954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXA63_RS16590 (AXA63_16590) aroK 3424227..3424796 (-) 570 WP_000643712.1 shikimate kinase AroK -
  AXA63_RS16595 (AXA63_16595) pilQ 3424808..3426970 (-) 2163 WP_033503048.1 type IV pilus secretin PilQ family protein Machinery gene
  AXA63_RS16600 (AXA63_16600) pilP 3427038..3427565 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  AXA63_RS16605 (AXA63_16605) pilO 3427576..3428316 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  AXA63_RS16610 (AXA63_16610) pilN 3428313..3428954 (-) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  AXA63_RS16615 (AXA63_16615) pilM 3428954..3430012 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  AXA63_RS16620 (AXA63_16620) ponA 3430175..3432730 (+) 2556 WP_060853640.1 penicillin-binding protein PBP1a -
  AXA63_RS16625 (AXA63_16625) - 3432748..3433572 (-) 825 WP_002019666.1 putative RNA methyltransferase -
  AXA63_RS16630 (AXA63_16630) - 3433575..3433907 (-) 333 WP_000169594.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24019.35 Da        Isoelectric Point: 5.3968

>NTDB_id=169503 AXA63_RS16610 WP_000201227.1 3428313..3428954(-) (pilN) [Acinetobacter baumannii strain YU-R612]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=169503 AXA63_RS16610 WP_000201227.1 3428313..3428954(-) (pilN) [Acinetobacter baumannii strain YU-R612]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAGAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCCGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009HSE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

100

100

1
  comN Acinetobacter baylyi ADP1

71.905

98.592

0.709

Multiple sequence alignment