Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   A4C47_RS10165 Genome accession   NZ_CP017446
Coordinates   2009032..2009508 (-) Length   158 a.a.
NCBI ID   WP_001186192.1    Uniprot ID   A0A0H3JIA8
Organism   Escherichia coli O157:H7 strain 9234     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2004032..2014508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4C47_RS10120 (A4C47_10120) sbmC 2004524..2004997 (+) 474 WP_001105392.1 DNA gyrase inhibitor SbmC -
  A4C47_RS10125 (A4C47_10125) yeeA 2005196..2006254 (+) 1059 WP_001202488.1 FUSC family protein -
  A4C47_RS10130 (A4C47_10130) tmaR 2006426..2006755 (+) 330 WP_000450409.1 DUF496 family protein -
  A4C47_RS10135 (A4C47_10135) - 2006856..2007038 (-) 183 WP_001016346.1 EutP/PduV family microcompartment system protein -
  A4C47_RS28845 - 2007101..2007238 (+) 138 Protein_1934 transposase domain-containing protein -
  A4C47_RS30820 (A4C47_10140) - 2007527..2007619 (-) 93 Protein_1935 hypothetical protein -
  A4C47_RS10145 (A4C47_10145) yeeW 2007653..2007847 (-) 195 WP_000988600.1 DUF5983 family protein -
  A4C47_RS10150 (A4C47_10150) cbtA 2007844..2008217 (-) 374 Protein_1937 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  A4C47_RS10155 (A4C47_10155) cbeA 2008306..2008674 (-) 369 WP_001285587.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  A4C47_RS10160 (A4C47_10160) yeeT 2008748..2008969 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  A4C47_RS10165 (A4C47_10165) radC 2009032..2009508 (-) 477 WP_001186192.1 JAB domain-containing protein Machinery gene
  A4C47_RS10170 (A4C47_10170) - 2009523..2010002 (-) 480 WP_000860079.1 antirestriction protein -
  A4C47_RS10175 (A4C47_10175) - 2010084..2010905 (-) 822 WP_024177368.1 DUF932 domain-containing protein -
  A4C47_RS10180 (A4C47_10180) - 2011126..2011536 (-) 411 WP_000846711.1 hypothetical protein -
  A4C47_RS10185 (A4C47_10185) - 2011552..2012235 (-) 684 WP_000775497.1 hypothetical protein -
  A4C47_RS10190 (A4C47_10190) - 2012371..2013441 (-) 1071 WP_000102660.1 patatin-like phospholipase family protein -
  A4C47_RS10195 (A4C47_10195) - 2013438..2014343 (-) 906 WP_000203545.1 diguanylate cyclase regulator RdcB family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=168918 A4C47_RS10165 WP_001186192.1 2009032..2009508(-) (radC) [Escherichia coli O157:H7 strain 9234]
MQQISFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=168918 A4C47_RS10165 WP_001186192.1 2009032..2009508(-) (radC) [Escherichia coli O157:H7 strain 9234]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TAGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3JIA8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment