Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PcP3B5_RS03870 Genome accession   NZ_CP014158
Coordinates   841008..841505 (+) Length   165 a.a.
NCBI ID   WP_009617188.1    Uniprot ID   A0A127MME3
Organism   Pseudomonas citronellolis strain P3B5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 836008..846505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PcP3B5_RS03860 (PcP3B5_07870) uvrA 836534..839389 (-) 2856 WP_009617186.1 excinuclease ABC subunit UvrA -
  PcP3B5_RS03865 (PcP3B5_07880) - 839601..840989 (+) 1389 WP_058488427.1 MFS transporter -
  PcP3B5_RS03870 (PcP3B5_07890) ssb 841008..841505 (+) 498 WP_009617188.1 single-stranded DNA-binding protein Machinery gene
  PcP3B5_RS03875 (PcP3B5_07900) - 842215..842412 (+) 198 WP_058071805.1 hypothetical protein -
  PcP3B5_RS03880 (PcP3B5_07910) - 842453..843688 (-) 1236 WP_058071804.1 hypothetical protein -
  PcP3B5_RS03885 (PcP3B5_07920) - 844045..845001 (-) 957 WP_058071803.1 PDR/VanB family oxidoreductase -
  PcP3B5_RS03890 (PcP3B5_07930) - 844998..845435 (-) 438 WP_061560594.1 RidA family protein -
  PcP3B5_RS03895 (PcP3B5_07940) - 845432..846463 (-) 1032 WP_043315330.1 aromatic ring-hydroxylating oxygenase subunit alpha -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18229.15 Da        Isoelectric Point: 5.2781

>NTDB_id=168918 PcP3B5_RS03870 WP_009617188.1 841008..841505(+) (ssb) [Pseudomonas citronellolis strain P3B5]
MARGVNKVILVGNVGGDPETRYLPNGNAVTNVTLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIVAEYVRKGSQIYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPGAGGDDAPRAPREPQQRPQQAPRPAPQQQAAPAPQPAADYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=168918 PcP3B5_RS03870 WP_009617188.1 841008..841505(+) (ssb) [Pseudomonas citronellolis strain P3B5]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGCGATCCGGAAACCCGCTACCTGCCCAACGGCAA
CGCGGTGACCAACGTCACCCTGGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAGCAGGAACGTACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGTCGCCGAGTACGTGCGCAAGGGCTCGCAGATCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGACCGCTACACCACCGAGATCGTGGTAGACATCAACGG
TAACATGCAACTGCTCGGCGGCCGTCCGGGCGCCGGTGGCGACGACGCCCCGCGCGCGCCGCGCGAACCCCAGCAGCGCC
CGCAACAGGCCCCGCGCCCGGCGCCGCAACAACAGGCCGCCCCGGCTCCGCAGCCGGCCGCCGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A127MME3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.571

100

0.6
  ssb Glaesserella parasuis strain SC1401

49.727

100

0.552
  ssb Neisseria gonorrhoeae MS11

46.023

100

0.491
  ssb Neisseria meningitidis MC58

46.023

100

0.491

Multiple sequence alignment