Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACN28R_RS23490 Genome accession   NZ_CP014137
Coordinates   5302839..5303378 (-) Length   179 a.a.
NCBI ID   WP_095835639.1    Uniprot ID   -
Organism   Brenneria goodwinii strain FRB141     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5297839..5308378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN28R_RS23470 (AWC36_23105) - 5298453..5299331 (-) 879 WP_048637540.1 metal ABC transporter substrate-binding protein -
  ACN28R_RS23475 (AWC36_23110) - 5299361..5300215 (-) 855 WP_095835636.1 metal ABC transporter permease -
  ACN28R_RS23480 (AWC36_23115) - 5300212..5300916 (-) 705 WP_095835637.1 metal ABC transporter ATP-binding protein -
  ACN28R_RS23485 (AWC36_23120) - 5301496..5302653 (+) 1158 WP_095835638.1 metallophosphoesterase -
  ACN28R_RS23490 (AWC36_23125) ssb 5302839..5303378 (-) 540 WP_095835639.1 single-stranded DNA-binding protein SSB1 Machinery gene
  ACN28R_RS23495 (AWC36_23130) uvrA 5303613..5306450 (+) 2838 WP_095835640.1 excinuclease ABC subunit UvrA -
  ACN28R_RS23500 (AWC36_23135) - 5306476..5306895 (+) 420 WP_095835641.1 secondary thiamine-phosphate synthase enzyme YjbQ -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19200.18 Da        Isoelectric Point: 5.2358

>NTDB_id=168636 ACN28R_RS23490 WP_095835639.1 5302839..5303378(-) (ssb) [Brenneria goodwinii strain FRB141]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSDSWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWADQSGVERYTTEVVVNIGGTMQMLGGRQNSGAPAGGQQSGGWGQPQQPQQGGNQFSGGAQAQPQPSRPAQN
NAPAASNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=168636 ACN28R_RS23490 WP_095835639.1 5302839..5303378(-) (ssb) [Brenneria goodwinii strain FRB141]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGAAATCTGGGGCAGGACCCGGAAGTTCGCTACATGCCGAATGG
TGGTGCAGTCGCCAACATCACACTGGCCACGTCCGATAGCTGGCGTGATAAGCAAACCGGCGAGCAGAAAGAGAAAACCG
AATGGCACCGCGTCGTGCTGTTCGGCAAGTTGGCCGAAGTCGCTGGCGAATACCTGCGCAAAGGTTCTCAGGTTTACATT
GAAGGTTCGCTGCAAACCCGTAAATGGGCCGACCAGTCCGGCGTGGAACGTTACACCACCGAGGTGGTTGTCAACATTGG
CGGCACCATGCAAATGCTGGGCGGCCGTCAAAACAGTGGCGCGCCGGCCGGAGGACAGCAATCCGGCGGATGGGGCCAAC
CCCAGCAACCGCAGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAAGCTCAGCCTCAGCCTTCACGCCCGGCGCAGAAT
AACGCACCGGCAGCAAGCAACGAGCCGCCGATGGATTTCGACGACGACATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.658

100

0.749
  ssb Glaesserella parasuis strain SC1401

57.219

100

0.598
  ssb Neisseria meningitidis MC58

48.066

100

0.486
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.486

Multiple sequence alignment