Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AL468_RS20355 Genome accession   NZ_CP014134
Coordinates   2328166..2328702 (+) Length   178 a.a.
NCBI ID   WP_012841367.1    Uniprot ID   A0AAE4M8V6
Organism   Vibrio diabolicus strain FDAARGOS_99     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 2328888..2351716 2328166..2328702 flank 186


Gene organization within MGE regions


Location: 2328166..2351716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL468_RS20355 (AL468_11770) ssb 2328166..2328702 (+) 537 WP_012841367.1 single-stranded DNA-binding protein Machinery gene
  AL468_RS20360 (AL468_11775) - 2328888..2330204 (+) 1317 WP_104974746.1 site-specific integrase -
  AL468_RS20365 (AL468_11780) - 2330217..2331770 (+) 1554 WP_104974747.1 site-specific integrase -
  AL468_RS20370 (AL468_11785) - 2331763..2334126 (+) 2364 WP_104974748.1 integrase -
  AL468_RS20375 (AL468_11790) - 2334129..2334545 (+) 417 WP_104974749.1 hypothetical protein -
  AL468_RS20380 (AL468_11795) - 2335109..2335306 (+) 198 WP_104974750.1 hypothetical protein -
  AL468_RS20385 (AL468_11800) - 2335441..2335605 (+) 165 WP_168187842.1 ATP-binding domain-containing protein -
  AL468_RS20390 (AL468_11805) - 2336062..2336892 (-) 831 WP_104974752.1 abortive infection family protein -
  AL468_RS20395 (AL468_11810) - 2337224..2337976 (-) 753 WP_104975100.1 metallophosphoesterase -
  AL468_RS20400 (AL468_11815) - 2339321..2340394 (-) 1074 WP_104974753.1 MBL fold metallo-hydrolase -
  AL468_RS20410 (AL468_11825) csrD 2341912..2343921 (+) 2010 WP_104974755.1 RNase E specificity factor CsrD -
  AL468_RS20415 (AL468_11830) - 2343933..2345378 (+) 1446 WP_104974756.1 MSHA biogenesis protein MshI -
  AL468_RS20420 (AL468_11835) gspM 2345375..2346025 (+) 651 WP_104974757.1 type II secretion system protein GspM -
  AL468_RS20425 (AL468_11840) - 2346018..2346350 (+) 333 WP_104974758.1 MSHA biogenesis protein MshK -
  AL468_RS20430 (AL468_11845) mshL 2346371..2348014 (+) 1644 WP_046873589.1 pilus (MSHA type) biogenesis protein MshL -
  AL468_RS20435 (AL468_11850) - 2348059..2348904 (+) 846 WP_104974759.1 AAA family ATPase -
  AL468_RS20440 (AL468_11855) - 2348901..2349995 (+) 1095 WP_210405559.1 tetratricopeptide repeat protein -
  AL468_RS20445 (AL468_11860) - 2349992..2351716 (+) 1725 WP_104974761.1 GspE/PulE family protein -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19791.83 Da        Isoelectric Point: 4.9164

>NTDB_id=168580 AL468_RS20355 WP_012841367.1 2328166..2328702(+) (ssb) [Vibrio diabolicus strain FDAARGOS_99]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRGQGGGAPMGGQQQQQGGWGQPQQPAQQQYNAPQQQQQQQAPQQ
PQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=168580 AL468_RS20355 WP_012841367.1 2328166..2328702(+) (ssb) [Vibrio diabolicus strain FDAARGOS_99]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCGAATGG
CGGTGCAGTAGCAAACATTACTATTGCGACTTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACGG
AATGGCACCGTGTTGTGTTGTTCGGCAAACTTGCGGAAGTAGCAGGTGAGTACTTGCGTAAAGGTTCTCAAGTATACATT
GAAGGCCAACTGCAAACTCGTAAATGGCAAGACCAAAGCGGTCAAGATCGCTACTCAACTGAAGTCGTTGTTCAAGGCTT
CAACGGCGTGATGCAAATGCTTGGCGGTCGTGGTCAAGGTGGCGGCGCACCAATGGGCGGTCAACAGCAGCAGCAAGGTG
GATGGGGTCAGCCTCAACAACCAGCTCAGCAGCAGTACAATGCGCCTCAGCAACAGCAACAACAGCAGGCTCCGCAGCAA
CCACAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

79.67

100

0.815
  ssb Glaesserella parasuis strain SC1401

56.614

100

0.601
  ssb Neisseria meningitidis MC58

46.927

100

0.472
  ssb Neisseria gonorrhoeae MS11

43.85

100

0.461

Multiple sequence alignment