Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   AL468_RS20350 Genome accession   NZ_CP014134
Coordinates   2327244..2327888 (-) Length   214 a.a.
NCBI ID   WP_005397417.1    Uniprot ID   A0AAQ2J3W0
Organism   Vibrio diabolicus strain FDAARGOS_99     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2322244..2332888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL468_RS20340 (AL468_11755) uvrA 2323241..2326063 (-) 2823 WP_046873583.1 excinuclease ABC subunit UvrA -
  AL468_RS20345 (AL468_11760) galU 2326213..2327085 (-) 873 WP_005397418.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  AL468_RS20350 (AL468_11765) qstR 2327244..2327888 (-) 645 WP_005397417.1 LuxR C-terminal-related transcriptional regulator Regulator
  AL468_RS20355 (AL468_11770) ssb 2328166..2328702 (+) 537 WP_012841367.1 single-stranded DNA-binding protein Machinery gene
  AL468_RS20360 (AL468_11775) - 2328888..2330204 (+) 1317 WP_104974746.1 site-specific integrase -
  AL468_RS20365 (AL468_11780) - 2330217..2331770 (+) 1554 WP_104974747.1 site-specific integrase -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24483.41 Da        Isoelectric Point: 9.7165

>NTDB_id=168579 AL468_RS20350 WP_005397417.1 2327244..2327888(-) (qstR) [Vibrio diabolicus strain FDAARGOS_99]
MRKSAYARKLFLISMEDNAQKKVAALEKYIDMSIPVISTEALMEAKPQHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLSFGQLKGLFYSEDTLEQIGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=168579 AL468_RS20350 WP_005397417.1 2327244..2327888(-) (qstR) [Vibrio diabolicus strain FDAARGOS_99]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATCAGTATGGAAGATAATGCGCAAAAAAAGGTGGCAGCACTCGA
AAAGTACATTGATATGAGCATCCCGGTGATTTCGACCGAAGCACTCATGGAAGCTAAGCCACAGCATCGTAATAAAATCC
TACTGATCGACTTCAGTGAACATAAATCACTCGTTCAATCGATCAAAAACTTACCGCTGGTATGGAAGAACTTTGAAACC
GTTGTGTTCAATGTCCCTAAAAGGCTGACCACGGATGAGCTTCTTTCATTTGGTCAATTAAAGGGGCTGTTCTATTCCGA
AGATACGCTAGAGCAAATTGGAGAAGGATTAAAAGGCATTGTTAACGGTCAAAACTGGCTGCCGCGTAATGTAACCAGTC
AACTTTTACACTATTACCGTAACGTCATTAATACTCATACTGCCCCAGCCACGGTAGACCTAACCATTCGCGAGCTGCAA
GTACTGCGTTGCTTGCAAGCTGGTGCCTCGAACAGCCAAATGGCCGAGGAATTATTTGTCAGTGAATTCACCATCAAATC
GCACTTGTATCAGATATTCAAAAAGCTATCAGTGAAGAATCGCGTTCAGGCTATCGCGTGGGCAGATCAAAACTTAATGT
CATGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

95.794

100

0.958
  qstR Vibrio campbellii strain DS40M4

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

52.804

100

0.528

Multiple sequence alignment