Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   AL552_RS14435 Genome accession   NZ_CP014094
Coordinates   2730013..2730588 (-) Length   191 a.a.
NCBI ID   WP_046874634.1    Uniprot ID   -
Organism   Vibrio diabolicus strain FDAARGOS_96     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2725013..2735588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL552_RS14410 (AL552_22565) aroB 2725304..2726404 (-) 1101 WP_104969860.1 3-dehydroquinate synthase -
  AL552_RS14415 (AL552_22570) aroK 2726436..2726954 (-) 519 WP_005381319.1 shikimate kinase AroK -
  AL552_RS14420 (AL552_22575) pilQ 2727142..2728890 (-) 1749 WP_006742777.1 type IV pilus secretin PilQ Machinery gene
  AL552_RS14425 (AL552_22580) pilP 2728922..2729437 (-) 516 WP_012841352.1 pilus assembly protein PilP Machinery gene
  AL552_RS14430 (AL552_22585) pilO 2729427..2730020 (-) 594 WP_012841351.1 type 4a pilus biogenesis protein PilO Machinery gene
  AL552_RS14435 (AL552_22590) pilN 2730013..2730588 (-) 576 WP_046874634.1 PilN domain-containing protein Machinery gene
  AL552_RS14440 (AL552_22595) pilM 2730572..2731588 (-) 1017 WP_005395718.1 type IV pilus biogenesis protein PilM Machinery gene
  AL552_RS14445 (AL552_22600) - 2731731..2734292 (+) 2562 WP_104969861.1 penicillin-binding protein 1A -
  AL552_RS14450 (AL552_22605) oxyR 2734344..2735255 (-) 912 WP_005395720.1 DNA-binding transcriptional regulator OxyR -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22353.85 Da        Isoelectric Point: 7.0774

>NTDB_id=168342 AL552_RS14435 WP_046874634.1 2730013..2730588(-) (pilN) [Vibrio diabolicus strain FDAARGOS_96]
MLYRINLLPWRENQREEHRRRFISLVALGMLVAIGIQWGIGKFFEYQQDQQQERLDYLTHYIAELDQRIEAMKIAEQEHS
KILERLKVVEGLQNGRNKTTEFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPKLATMLDNMERSAKLNDVEMHSIV
HGKARFGKEFQTFKVSFMFKVPEKKVEAQHG

Nucleotide


Download         Length: 576 bp        

>NTDB_id=168342 AL552_RS14435 WP_046874634.1 2730013..2730588(-) (pilN) [Vibrio diabolicus strain FDAARGOS_96]
GTGCTTTATCGCATTAATTTACTTCCTTGGCGAGAGAACCAAAGAGAAGAGCACCGACGTCGTTTCATTAGCTTGGTCGC
GTTAGGCATGTTGGTCGCCATTGGTATTCAATGGGGTATTGGAAAGTTTTTTGAGTACCAACAAGATCAGCAGCAGGAGC
GGCTTGATTACCTTACTCACTACATTGCTGAGCTCGACCAGCGTATTGAAGCAATGAAAATCGCCGAGCAAGAGCACAGC
AAAATCCTCGAACGTTTAAAAGTGGTTGAAGGGTTACAAAACGGTAGAAACAAAACGACCGAGTTTATGAACTTGATGCC
AGCCGTCATTCCTGAAGGTGTATATGTCGACAAGATCAAAATGAATGATCTGGAAATTGAGATCTCGGGGATCTCTGATA
GCACTCCAAAACTTGCCACGATGTTGGACAACATGGAGCGTTCGGCCAAGTTGAATGATGTAGAAATGCACTCCATCGTT
CACGGAAAAGCGCGTTTTGGAAAAGAGTTCCAAACGTTCAAAGTGTCTTTCATGTTCAAAGTGCCGGAGAAGAAAGTGGA
GGCCCAGCATGGTTGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(103-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio campbellii strain DS40M4

83.246

100

0.832
  pilN Vibrio cholerae strain A1552

60.106

98.429

0.592

Multiple sequence alignment