Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   AL552_RS14420 Genome accession   NZ_CP014094
Coordinates   2727142..2728890 (-) Length   582 a.a.
NCBI ID   WP_006742777.1    Uniprot ID   A0AA92LSF7
Organism   Vibrio diabolicus strain FDAARGOS_96     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2722142..2733890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL552_RS14400 (AL552_22555) - 2722828..2723667 (-) 840 WP_047009939.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  AL552_RS14405 (AL552_22560) - 2723737..2725251 (-) 1515 WP_104969859.1 SPOR domain-containing protein -
  AL552_RS14410 (AL552_22565) aroB 2725304..2726404 (-) 1101 WP_104969860.1 3-dehydroquinate synthase -
  AL552_RS14415 (AL552_22570) aroK 2726436..2726954 (-) 519 WP_005381319.1 shikimate kinase AroK -
  AL552_RS14420 (AL552_22575) pilQ 2727142..2728890 (-) 1749 WP_006742777.1 type IV pilus secretin PilQ Machinery gene
  AL552_RS14425 (AL552_22580) pilP 2728922..2729437 (-) 516 WP_012841352.1 pilus assembly protein PilP Machinery gene
  AL552_RS14430 (AL552_22585) pilO 2729427..2730020 (-) 594 WP_012841351.1 type 4a pilus biogenesis protein PilO Machinery gene
  AL552_RS14435 (AL552_22590) pilN 2730013..2730588 (-) 576 WP_046874634.1 PilN domain-containing protein Machinery gene
  AL552_RS14440 (AL552_22595) pilM 2730572..2731588 (-) 1017 WP_005395718.1 type IV pilus biogenesis protein PilM Machinery gene

Sequence

Protein


Download         Length: 582 a.a.        Molecular weight: 63760.73 Da        Isoelectric Point: 4.4533

>NTDB_id=168339 AL552_RS14420 WP_006742777.1 2727142..2728890(-) (pilQ) [Vibrio diabolicus strain FDAARGOS_96]
MKMRQGLTRTPRILTGLFSLWLFVFLAPLVAAEEVSSNALKSIDFRTNKDKDAVIVVELASPAAIVDVKRVQEGLSIDLL
NTSVKDEQLYLLDVKDFSTVVESVEVFRDTSTTRLVAHINEEYTHDYRLTGRFLEIKVAKIKPNEKAPDKSILEKEGKLI
SINFQDIPVRNVLQLIADYNQFNLVVSDSVEGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPTDELDLREKQQ
LEKQQLEQTMGELSSEIIKVNFAKASDIAEMINGEGNISMLSERGSMTIDERTNSLLIRELPENIEVIREIIESLDIPVK
QVQIEARIVTINEGNMDELGIRWGFTSINGNNTVGGSIENNLATIGLYNGGGEGEDGGDGDGVGIDDFLNVNLAATSPNA
TSIAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLESSSSGATTVTFKKAVLSLKVTPQ
ITPDNRLVLDLSVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPLLGDLPLLGALFR
RSYENVGKSELLIFVTPKVVIQ

Nucleotide


Download         Length: 1749 bp        

>NTDB_id=168339 AL552_RS14420 WP_006742777.1 2727142..2728890(-) (pilQ) [Vibrio diabolicus strain FDAARGOS_96]
ATGAAAATGAGACAAGGATTAACACGTACACCAAGGATACTAACAGGGCTCTTCTCCTTATGGTTGTTTGTATTTTTAGC
CCCTTTAGTGGCAGCAGAAGAAGTATCGTCTAATGCCTTAAAGAGTATCGACTTTCGCACTAATAAAGATAAAGACGCCG
TTATAGTCGTTGAACTGGCGTCACCTGCCGCGATTGTCGATGTCAAACGCGTACAGGAAGGGTTAAGTATCGATTTGCTT
AATACTTCGGTAAAAGACGAGCAACTGTATCTCCTAGACGTAAAAGATTTCTCGACTGTGGTTGAAAGCGTAGAGGTGTT
TCGCGATACCTCAACTACTCGCTTGGTTGCGCACATTAATGAAGAATATACGCATGATTATCGTTTAACGGGGCGATTCT
TGGAAATCAAAGTGGCTAAGATCAAACCCAATGAGAAAGCCCCGGATAAAAGCATTCTAGAAAAAGAAGGCAAGCTCATT
TCAATTAACTTCCAAGATATTCCTGTACGTAACGTGTTACAGCTGATTGCTGACTACAACCAGTTCAACTTGGTTGTTTC
AGACTCCGTAGAAGGTAACCTCACACTTCGTCTTGATGGTGTTCCGTGGCAGCAAGTGCTGGATATTATTTTGCAAGTTA
AGGGGTTAGATAAGCGTGTTGATGGCAACGTGATTCTGGTTGCTCCAACAGATGAGCTTGATCTGCGCGAAAAACAGCAA
CTCGAAAAGCAGCAGCTAGAACAAACGATGGGAGAGCTTTCGTCTGAAATCATCAAGGTAAACTTCGCTAAAGCATCAGA
TATTGCAGAGATGATCAACGGAGAAGGGAACATCAGTATGTTGTCTGAGCGAGGCAGTATGACCATTGATGAGCGGACTA
ACTCGTTATTGATTCGTGAGCTACCTGAAAACATTGAAGTGATTCGAGAAATTATTGAATCTTTGGATATCCCGGTGAAG
CAGGTTCAAATTGAAGCGCGTATTGTGACCATCAATGAAGGCAACATGGACGAGTTGGGAATTCGCTGGGGTTTTACCTC
TATTAATGGCAATAACACGGTTGGTGGCTCTATCGAAAACAACCTTGCCACGATCGGTTTATATAACGGTGGTGGTGAAG
GAGAAGACGGTGGTGACGGTGATGGAGTAGGTATCGATGACTTCCTAAACGTAAACTTAGCTGCAACCAGTCCAAACGCG
ACCAGCATTGCTTTTCAGGTTGCAAAATTAGGCTCAGACACCTTGTTAGACCTCGAGCTTTCTGCGCTGCAACAAGAGTC
CAAAGCTGAGATTATCTCAAGTCCACGTTTGATCACTACCAATAAGAAGCCTGCCTATATTGAGCAAGGTACCGAGATAC
CTTATCTAGAGTCCTCATCAAGTGGTGCTACGACGGTAACGTTCAAAAAAGCAGTATTGAGTTTGAAGGTGACGCCACAA
ATTACACCGGATAACCGTCTTGTGTTGGACTTAAGCGTTACGCAAGATAGGCCTGGACAAGTTGTGAAAACAGGCACTGG
TGAAGCCGTTGCGATTGATACTCAGCGTATCGGGACGCAAGTGTTAGTAAATAACGGTGAAACCGTCGTTCTTGGTGGTA
TTTTCCAGCACAGCATTACTAATTCGGTGGACAAAGTGCCTTTGTTAGGCGATCTGCCACTATTAGGTGCGCTTTTCCGT
CGAAGTTATGAAAATGTTGGCAAAAGTGAGCTGTTAATTTTCGTCACGCCTAAGGTGGTGATTCAGTAG

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(256-321)

Bacterial type II and III secretion system protein (Secretin)

(422-580)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio campbellii strain DS40M4

92.955

100

0.93
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

74.443

100

0.746
  pilQ Vibrio cholerae strain A1552

74.443

100

0.746
  pilQ Legionella pneumophila strain Lp02

40.787

96.048

0.392
  pilQ Legionella pneumophila strain ERS1305867

40.787

96.048

0.392
  pilQ Pseudomonas aeruginosa PAK

39.716

96.907

0.385
  comQ Acinetobacter baylyi ADP1

37.349

99.828

0.373
  pilQ Acinetobacter baumannii strain A118

36.409

100

0.373
  pilQ Acinetobacter baumannii D1279779

36.409

100

0.373

Multiple sequence alignment