Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AL552_RS14190 Genome accession   NZ_CP014094
Coordinates   2678401..2678931 (-) Length   176 a.a.
NCBI ID   WP_104969849.1    Uniprot ID   -
Organism   Vibrio diabolicus strain FDAARGOS_96     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2673401..2683931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL552_RS14170 (AL552_22325) - 2673721..2674053 (-) 333 WP_046873588.1 hypothetical protein -
  AL552_RS14175 (AL552_22330) gspM 2674046..2674696 (-) 651 WP_104969847.1 type II secretion system protein GspM -
  AL552_RS14180 (AL552_22335) - 2674693..2676138 (-) 1446 WP_104969848.1 MSHA biogenesis protein MshI -
  AL552_RS14185 (AL552_22340) csrD 2676150..2678159 (-) 2010 WP_048626836.1 RNase E specificity factor CsrD -
  AL552_RS14190 (AL552_22345) ssb 2678401..2678931 (-) 531 WP_104969849.1 single-stranded DNA-binding protein Machinery gene
  AL552_RS14195 (AL552_22350) qstR 2679210..2679854 (+) 645 WP_005397417.1 LuxR C-terminal-related transcriptional regulator Regulator
  AL552_RS14200 (AL552_22355) galU 2680013..2680885 (+) 873 WP_104969850.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  AL552_RS14205 (AL552_22360) uvrA 2681033..2683855 (+) 2823 WP_104969851.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19535.56 Da        Isoelectric Point: 4.9164

>NTDB_id=168337 AL552_RS14190 WP_104969849.1 2678401..2678931(-) (ssb) [Vibrio diabolicus strain FDAARGOS_96]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRGQGGGAPMGGQQQQQGGWGQPQQPAQQQYNAPQQQQQAPQQPQ
QQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=168337 AL552_RS14190 WP_104969849.1 2678401..2678931(-) (ssb) [Vibrio diabolicus strain FDAARGOS_96]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCGAACGG
CGGTGCAGTGGCAAACATTACTATTGCGACTTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACGG
AATGGCACCGTGTTGTGTTGTTCGGCAAACTTGCGGAAGTAGCAGGTGAGTACTTGCGTAAAGGTTCTCAAGTATACATT
GAAGGCCAACTGCAAACTCGTAAATGGCAAGACCAAAGCGGTCAAGATCGCTACTCAACTGAAGTCGTTGTTCAAGGCTT
CAACGGCGTGATGCAAATGCTTGGCGGTCGTGGTCAAGGTGGCGGCGCACCAATGGGCGGTCAACAGCAGCAGCAAGGTG
GATGGGGTCAGCCTCAACAACCAGCTCAGCAGCAGTACAATGCGCCTCAGCAACAGCAACAGGCTCCGCAGCAACCACAG
CAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

79.33

100

0.807
  ssb Glaesserella parasuis strain SC1401

56.085

100

0.602
  ssb Neisseria meningitidis MC58

47.458

100

0.477
  ssb Neisseria gonorrhoeae MS11

47.458

100

0.477

Multiple sequence alignment