Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   BHE76_RS09575 Genome accession   NZ_CP017353
Coordinates   2049970..2050494 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain FA-HZ1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2044970..2055494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BHE76_RS09560 (BHE76_09555) aroB 2046086..2047192 (-) 1107 WP_003162482.1 3-dehydroquinate synthase -
  BHE76_RS09565 (BHE76_09560) aroK 2047242..2047760 (-) 519 WP_003095833.1 shikimate kinase AroK -
  BHE76_RS09570 (BHE76_09565) pilQ 2047772..2049916 (-) 2145 WP_023114914.1 type 4a pilus secretin PilQ Machinery gene
  BHE76_RS09575 (BHE76_09570) comL/pilP 2049970..2050494 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  BHE76_RS09580 (BHE76_09575) pilO 2050491..2051114 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  BHE76_RS09585 (BHE76_09580) pilN 2051111..2051707 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  BHE76_RS09590 (BHE76_09585) pilM 2051707..2052771 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  BHE76_RS09595 (BHE76_09590) - 2052956..2055427 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=168337 BHE76_RS09575 WP_003095836.1 2049970..2050494(-) (comL/pilP) [Pseudomonas aeruginosa strain FA-HZ1]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=168337 BHE76_RS09575 WP_003095836.1 2049970..2050494(-) (comL/pilP) [Pseudomonas aeruginosa strain FA-HZ1]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362

Multiple sequence alignment