Detailed information
Bioinformatically predicted
Overview
| Name | pilP | Type | Machinery gene |
| Locus tag | AL552_RS14425 | Genome accession | NZ_CP014094 |
| Coordinates | 2728922..2729437 (-) | Length | 171 a.a. |
| NCBI ID | WP_012841352.1 | Uniprot ID | - |
| Organism | Vibrio diabolicus strain FDAARGOS_96 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2723922..2734437
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AL552_RS14410 (AL552_22565) | aroB | 2725304..2726404 (-) | 1101 | WP_104969860.1 | 3-dehydroquinate synthase | - |
| AL552_RS14415 (AL552_22570) | aroK | 2726436..2726954 (-) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| AL552_RS14420 (AL552_22575) | pilQ | 2727142..2728890 (-) | 1749 | WP_006742777.1 | type IV pilus secretin PilQ | Machinery gene |
| AL552_RS14425 (AL552_22580) | pilP | 2728922..2729437 (-) | 516 | WP_012841352.1 | pilus assembly protein PilP | Machinery gene |
| AL552_RS14430 (AL552_22585) | pilO | 2729427..2730020 (-) | 594 | WP_012841351.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| AL552_RS14435 (AL552_22590) | pilN | 2730013..2730588 (-) | 576 | WP_046874634.1 | PilN domain-containing protein | Machinery gene |
| AL552_RS14440 (AL552_22595) | pilM | 2730572..2731588 (-) | 1017 | WP_005395718.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| AL552_RS14445 (AL552_22600) | - | 2731731..2734292 (+) | 2562 | WP_104969861.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 18997.16 Da Isoelectric Point: 10.5314
>NTDB_id=168340 AL552_RS14425 WP_012841352.1 2728922..2729437(-) (pilP) [Vibrio diabolicus strain FDAARGOS_96]
MTSKHLLLVLMGSLLLGCQANDESLTDFIRGVESQARRDVEKLKPADKYVAVTYAPEVQRAPFELPKEATIATQPVARKD
CWQPPSRRRTGKLEKFPLSQLRLKGVMGMGNTVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVSHSYLLVNETLPDGLGC
WQKRKVKLALR
MTSKHLLLVLMGSLLLGCQANDESLTDFIRGVESQARRDVEKLKPADKYVAVTYAPEVQRAPFELPKEATIATQPVARKD
CWQPPSRRRTGKLEKFPLSQLRLKGVMGMGNTVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVSHSYLLVNETLPDGLGC
WQKRKVKLALR
Nucleotide
Download Length: 516 bp
>NTDB_id=168340 AL552_RS14425 WP_012841352.1 2728922..2729437(-) (pilP) [Vibrio diabolicus strain FDAARGOS_96]
ATGACAAGTAAGCATTTGTTACTGGTACTGATGGGGTCTCTGCTACTTGGATGTCAGGCGAATGATGAGTCATTAACGGA
TTTTATTCGAGGGGTTGAGAGTCAGGCGCGTCGAGATGTCGAGAAACTTAAGCCTGCAGATAAGTATGTTGCCGTCACGT
ACGCACCTGAAGTACAGCGTGCGCCCTTTGAGTTACCAAAAGAAGCCACGATCGCCACTCAGCCCGTTGCAAGAAAAGAT
TGTTGGCAACCGCCTTCAAGAAGGCGCACTGGCAAATTAGAAAAATTCCCATTAAGCCAATTACGTTTGAAAGGAGTTAT
GGGCATGGGTAATACGGTTTCTGGTCTCGTTCAGGCACCCAACGGCACCGTTTATAAAGTGAAGCCGGGGCAATACCTCG
GACGCAACAACGGCAAAGTGACCCATGTCAGCCATTCTTATTTGTTAGTTAATGAAACGTTGCCCGACGGCTTAGGGTGT
TGGCAGAAGCGTAAAGTTAAGTTGGCTTTGAGATAG
ATGACAAGTAAGCATTTGTTACTGGTACTGATGGGGTCTCTGCTACTTGGATGTCAGGCGAATGATGAGTCATTAACGGA
TTTTATTCGAGGGGTTGAGAGTCAGGCGCGTCGAGATGTCGAGAAACTTAAGCCTGCAGATAAGTATGTTGCCGTCACGT
ACGCACCTGAAGTACAGCGTGCGCCCTTTGAGTTACCAAAAGAAGCCACGATCGCCACTCAGCCCGTTGCAAGAAAAGAT
TGTTGGCAACCGCCTTCAAGAAGGCGCACTGGCAAATTAGAAAAATTCCCATTAAGCCAATTACGTTTGAAAGGAGTTAT
GGGCATGGGTAATACGGTTTCTGGTCTCGTTCAGGCACCCAACGGCACCGTTTATAAAGTGAAGCCGGGGCAATACCTCG
GACGCAACAACGGCAAAGTGACCCATGTCAGCCATTCTTATTTGTTAGTTAATGAAACGTTGCCCGACGGCTTAGGGTGT
TGGCAGAAGCGTAAAGTTAAGTTGGCTTTGAGATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilP | Vibrio campbellii strain DS40M4 |
84.795 |
100 |
0.848 |
| pilP | Vibrio cholerae strain A1552 |
56.395 |
100 |
0.567 |