Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   AL552_RS06295 Genome accession   NZ_CP014094
Coordinates   1148814..1149401 (+) Length   195 a.a.
NCBI ID   WP_005393210.1    Uniprot ID   A0AAE4M4Z8
Organism   Vibrio diabolicus strain FDAARGOS_96     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1143814..1154401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL552_RS06270 (AL552_14430) panP 1143900..1145546 (-) 1647 WP_006742621.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -
  AL552_RS06275 (AL552_14435) - 1145747..1146259 (-) 513 WP_012841922.1 hypothetical protein -
  AL552_RS06280 (AL552_14440) - 1146466..1147371 (-) 906 WP_104969314.1 lysine exporter LysO family protein -
  AL552_RS06285 (AL552_14445) - 1147524..1148444 (-) 921 WP_005393212.1 HDOD domain-containing protein -
  AL552_RS06295 (AL552_14455) tfoX 1148814..1149401 (+) 588 WP_005393210.1 TfoX/Sxy family DNA transformation protein Regulator
  AL552_RS06300 (AL552_14460) - 1149592..1150137 (-) 546 WP_104969315.1 hypothetical protein -
  AL552_RS06305 (AL552_14465) - 1150427..1150924 (-) 498 WP_012841921.1 response regulator -
  AL552_RS06310 (AL552_14470) - 1150921..1152861 (-) 1941 WP_104970044.1 ATP-binding protein -
  AL552_RS06315 (AL552_14475) - 1153048..1154316 (+) 1269 WP_104969316.1 DUF945 family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22436.75 Da        Isoelectric Point: 8.0901

>NTDB_id=168320 AL552_RS06295 WP_005393210.1 1148814..1149401(+) (tfoX) [Vibrio diabolicus strain FDAARGOS_96]
MDMTDQAFFKYVRNFSEYQKRSMFGGIGLFTDDAMFALVSNDCCYLRGGNGLDEVFTQLNCEKYKHVKKQTTATVNYYDV
TDLFESGYAGLDELVQKSIEYSIKERKYQKSSASRRLRDLPNMQLTLERMVKKAGVDDVETFLELGPVKVFNKVKVAYGN
DVDVKLLWKFAGATDGVHWKLIQEPRKKQLLALCE

Nucleotide


Download         Length: 588 bp        

>NTDB_id=168320 AL552_RS06295 WP_005393210.1 1148814..1149401(+) (tfoX) [Vibrio diabolicus strain FDAARGOS_96]
ATGGACATGACAGACCAAGCTTTTTTTAAATATGTACGCAACTTTAGTGAGTATCAAAAACGTTCTATGTTCGGTGGTAT
CGGTTTATTCACCGATGATGCTATGTTTGCGCTTGTCAGCAATGATTGCTGCTACTTACGTGGTGGTAATGGATTGGACG
AAGTGTTTACTCAACTGAATTGCGAAAAATATAAGCACGTCAAAAAACAGACGACGGCAACCGTAAATTATTATGACGTA
ACAGATTTGTTTGAATCCGGATATGCAGGACTCGATGAACTGGTACAAAAATCAATTGAATACTCAATTAAGGAACGAAA
ATATCAAAAGTCTTCTGCCAGTAGACGTTTGAGAGATCTGCCAAATATGCAGTTAACTCTTGAGCGAATGGTCAAGAAAG
CAGGTGTTGATGACGTAGAAACCTTTTTAGAACTTGGACCTGTAAAAGTCTTCAACAAAGTTAAAGTGGCTTATGGCAAT
GACGTTGATGTTAAGTTGCTTTGGAAATTCGCTGGTGCAACTGACGGTGTTCATTGGAAACTGATTCAAGAGCCGCGTAA
AAAGCAGTTATTGGCGCTGTGTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(11-100)

TfoX C-terminal domain (TfoX_C)

(114-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio parahaemolyticus RIMD 2210633

91.795

100

0.918
  tfoX Vibrio campbellii strain DS40M4

90.256

100

0.903
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

66.321

98.974

0.656
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

66.321

98.974

0.656
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

66.321

98.974

0.656
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

66.321

98.974

0.656
  tfoX Vibrio cholerae strain A1552

66.321

98.974

0.656
  tfoX Aliivibrio fischeri ES114

60.209

97.949

0.59

Multiple sequence alignment