Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   BSBS38_RS13985 Genome accession   NZ_CP017314
Coordinates   2602270..2602965 (-) Length   231 a.a.
NCBI ID   WP_014480455.1    Uniprot ID   -
Organism   Bacillus subtilis strain BS38     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2597270..2607965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSBS38_RS13960 (BSBS38_02812) minD 2598206..2599012 (-) 807 WP_014480454.1 septum site-determining protein MinD -
  BSBS38_RS13965 (BSBS38_02813) minC 2599014..2599694 (-) 681 WP_004398901.1 septum site-determining protein MinC -
  BSBS38_RS13970 (BSBS38_02814) mreD 2599747..2600265 (-) 519 WP_004398811.1 rod shape-determining protein MreD -
  BSBS38_RS13975 (BSBS38_02815) mreC 2600262..2601134 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  BSBS38_RS13980 (BSBS38_02816) mreB 2601165..2602178 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  BSBS38_RS13985 (BSBS38_02817) ysxA/radC 2602270..2602965 (-) 696 WP_014480455.1 RadC family protein Machinery gene
  BSBS38_RS13990 (BSBS38_02818) maf 2603002..2603571 (-) 570 WP_014480456.1 Maf family nucleotide pyrophosphatase -
  BSBS38_RS13995 (BSBS38_02819) spoIIB 2603724..2604722 (-) 999 WP_014480457.1 stage II sporulation protein SpoIIB -
  BSBS38_RS14000 (BSBS38_02820) comC 2604856..2605602 (-) 747 WP_072592551.1 prepilin peptidase Machinery gene
  BSBS38_RS14005 (BSBS38_02821) folC 2605742..2607034 (-) 1293 WP_014480460.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26128.44 Da        Isoelectric Point: 7.9285

>NTDB_id=168266 BSBS38_RS13985 WP_014480455.1 2602270..2602965(-) (ysxA/radC) [Bacillus subtilis strain BS38]
MVIHDLPLKLKDFPIKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=168266 BSBS38_RS13985 WP_014480455.1 2602270..2602965(-) (ysxA/radC) [Bacillus subtilis strain BS38]
TTGGTCATACACGATCTGCCATTAAAACTCAAAGATTTCCCAATCAAAGAAAAGCCAAGAGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGCCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCGAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCTGCAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

99.567

100

0.996
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424