Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AL504_RS20135 Genome accession   NZ_CP014060
Coordinates   4423780..4424301 (+) Length   173 a.a.
NCBI ID   WP_035359744.1    Uniprot ID   -
Organism   Achromobacter xylosoxidans strain FDAARGOS_147     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4418780..4429301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL504_RS20125 (AL504_19935) uvrA 4419316..4422171 (-) 2856 WP_420534850.1 excinuclease ABC subunit UvrA -
  AL504_RS20130 (AL504_19940) - 4422306..4423490 (+) 1185 WP_061072935.1 MFS transporter -
  AL504_RS20135 (AL504_19945) ssb 4423780..4424301 (+) 522 WP_035359744.1 single-stranded DNA-binding protein Machinery gene
  AL504_RS20140 (AL504_19950) - 4424825..4425553 (+) 729 WP_061072936.1 class I SAM-dependent methyltransferase -
  AL504_RS20145 (AL504_19955) - 4425770..4426075 (+) 306 WP_061072937.1 DUF4148 domain-containing protein -
  AL504_RS20150 (AL504_19960) - 4426156..4426461 (+) 306 WP_006392007.1 DUF4148 domain-containing protein -
  AL504_RS20155 (AL504_19965) - 4426592..4427182 (+) 591 WP_006392006.1 TetR/AcrR family transcriptional regulator -
  AL504_RS20160 (AL504_19970) - 4427271..4428125 (-) 855 WP_006392005.1 isochorismatase family protein -
  AL504_RS20165 (AL504_19975) - 4428431..4429048 (-) 618 WP_006392003.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18670.71 Da        Isoelectric Point: 5.9702

>NTDB_id=168188 AL504_RS20135 WP_035359744.1 4423780..4424301(+) (ssb) [Achromobacter xylosoxidans strain FDAARGOS_147]
MASVNKVILVGNLGRDPEVRYSPEGAAICNMSIATTSTWKDKASGERREETEWHRVVMYNRLAEIAGEYLKKGRSVYIEG
RLKTRKWQDKDTGADRYSTEIVADQMQMLGGREDGGGGGGSYGGGGGYDDAPARQPQQRAPAQRPAPQQRPAPQAAPAGG
GANLADMDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=168188 AL504_RS20135 WP_035359744.1 4423780..4424301(+) (ssb) [Achromobacter xylosoxidans strain FDAARGOS_147]
ATGGCATCGGTTAACAAAGTCATTCTCGTGGGCAACCTGGGTCGCGACCCGGAAGTCCGCTATAGCCCCGAGGGGGCCGC
AATCTGCAACATGTCCATCGCCACGACCTCCACCTGGAAGGACAAGGCATCGGGCGAACGCCGCGAAGAAACCGAATGGC
ACCGCGTGGTCATGTACAACCGCCTGGCCGAAATCGCCGGCGAATACCTGAAGAAGGGCCGCTCGGTCTACATCGAGGGC
CGCCTGAAGACCCGCAAGTGGCAGGACAAGGACACCGGCGCTGACCGCTACAGCACCGAAATCGTCGCCGACCAGATGCA
GATGCTGGGCGGCCGCGAAGACGGCGGCGGCGGTGGCGGCAGCTACGGTGGCGGCGGCGGTTACGACGACGCGCCGGCGC
GCCAGCCGCAGCAGCGCGCCCCGGCCCAGCGCCCGGCGCCGCAGCAGCGTCCCGCGCCCCAGGCCGCGCCCGCCGGCGGC
GGCGCCAATCTGGCCGACATGGACGACGATATTCCTTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.645

100

0.578
  ssb Glaesserella parasuis strain SC1401

51.075

100

0.549
  ssb Neisseria gonorrhoeae MS11

53.143

100

0.538
  ssb Neisseria meningitidis MC58

52.571

100

0.532

Multiple sequence alignment