Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | AL539_RS10295 | Genome accession | NZ_CP014053 |
| Coordinates | 1860312..1860905 (-) | Length | 197 a.a. |
| NCBI ID | WP_033907305.1 | Uniprot ID | A0AAW9B9Y8 |
| Organism | Vibrio alginolyticus strain FDAARGOS_108 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1855312..1865905
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AL539_RS10275 (AL539_18505) | aroB | 1856197..1857297 (-) | 1101 | WP_104975646.1 | 3-dehydroquinate synthase | - |
| AL539_RS10280 (AL539_18510) | aroK | 1857330..1857848 (-) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| AL539_RS10285 (AL539_18515) | pilQ | 1858036..1859781 (-) | 1746 | WP_165439071.1 | type IV pilus secretin PilQ | Machinery gene |
| AL539_RS10290 (AL539_18520) | pilP | 1859807..1860322 (-) | 516 | WP_005382766.1 | pilus assembly protein PilP | Machinery gene |
| AL539_RS10295 (AL539_18525) | pilO | 1860312..1860905 (-) | 594 | WP_033907305.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| AL539_RS10300 (AL539_18530) | pilN | 1860898..1861473 (-) | 576 | WP_104975648.1 | PilN domain-containing protein | Machinery gene |
| AL539_RS10305 (AL539_18535) | pilM | 1861457..1862473 (-) | 1017 | WP_005381324.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| AL539_RS10310 (AL539_18540) | - | 1862618..1865179 (+) | 2562 | WP_025768081.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 197 a.a. Molecular weight: 23001.51 Da Isoelectric Point: 5.0948
>NTDB_id=168086 AL539_RS10295 WP_033907305.1 1860312..1860905(-) (pilO) [Vibrio alginolyticus strain FDAARGOS_108]
MVDWQDLEIDEMAEWPLLPQIVVIALLIMAIQGLGYWFYLKPKEEQLNHLIQQEQTLKVALKIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSEHFLYRLPLNIELTGDFHDIGHFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEETKNDK
MVDWQDLEIDEMAEWPLLPQIVVIALLIMAIQGLGYWFYLKPKEEQLNHLIQQEQTLKVALKIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSEHFLYRLPLNIELTGDFHDIGHFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEETKNDK
Nucleotide
Download Length: 594 bp
>NTDB_id=168086 AL539_RS10295 WP_033907305.1 1860312..1860905(-) (pilO) [Vibrio alginolyticus strain FDAARGOS_108]
GTGGTTGATTGGCAGGATCTCGAAATAGATGAAATGGCCGAGTGGCCATTGTTGCCCCAGATTGTAGTAATCGCGCTTCT
GATCATGGCGATTCAAGGCTTAGGTTATTGGTTTTACCTTAAACCGAAAGAAGAACAGTTGAATCACTTGATCCAGCAGG
AGCAGACACTCAAGGTGGCATTGAAGATCAAAGCGAACAAAGTGGCAGCGTTGCCTCAGCTTCAATCTCAATTGGATGAA
CTTACCACTCGTTACGAGTTATTACTGCAACAACTGCCTGCGCAAAAAGAGCTGGCTACAATGCTCGCTTCAGTGAATGA
GCTTGGCATCGACAATAAGCTGACTTTCACCCGAATCGACTGGGGCGAAAAACAATCAGAGCACTTCCTTTATCGTCTTC
CTTTAAACATAGAGTTAACGGGCGACTTTCATGACATCGGCCATTTTTCTCAGGCGATAGCGACGCTACCTCGAATCATC
ACGTTTAAAGATGTGACTTGGCAACGTGTCAGCCAAGAGAGTGAAACCCTGCACTTTCGGGTGCGCGCTAACACCTATCA
GTTTAAGCCGGAGGAGACGAAAAATGACAAGTAA
GTGGTTGATTGGCAGGATCTCGAAATAGATGAAATGGCCGAGTGGCCATTGTTGCCCCAGATTGTAGTAATCGCGCTTCT
GATCATGGCGATTCAAGGCTTAGGTTATTGGTTTTACCTTAAACCGAAAGAAGAACAGTTGAATCACTTGATCCAGCAGG
AGCAGACACTCAAGGTGGCATTGAAGATCAAAGCGAACAAAGTGGCAGCGTTGCCTCAGCTTCAATCTCAATTGGATGAA
CTTACCACTCGTTACGAGTTATTACTGCAACAACTGCCTGCGCAAAAAGAGCTGGCTACAATGCTCGCTTCAGTGAATGA
GCTTGGCATCGACAATAAGCTGACTTTCACCCGAATCGACTGGGGCGAAAAACAATCAGAGCACTTCCTTTATCGTCTTC
CTTTAAACATAGAGTTAACGGGCGACTTTCATGACATCGGCCATTTTTCTCAGGCGATAGCGACGCTACCTCGAATCATC
ACGTTTAAAGATGTGACTTGGCAACGTGTCAGCCAAGAGAGTGAAACCCTGCACTTTCGGGTGCGCGCTAACACCTATCA
GTTTAAGCCGGAGGAGACGAAAAATGACAAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio campbellii strain DS40M4 |
87.895 |
96.447 |
0.848 |
| pilO | Vibrio cholerae strain A1552 |
70.681 |
96.954 |
0.685 |