Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AL539_RS10065 Genome accession   NZ_CP014053
Coordinates   1809170..1809709 (-) Length   179 a.a.
NCBI ID   WP_005381235.1    Uniprot ID   A0AAW9BS04
Organism   Vibrio alginolyticus strain FDAARGOS_108     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1804170..1814709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL539_RS10045 (AL539_18275) - 1804977..1805696 (-) 720 WP_319016603.1 DUF6701 domain-containing protein -
  AL539_RS10050 (AL539_18280) - 1805784..1806704 (+) 921 WP_012196880.1 IS5 family transposase -
  AL539_RS26730 (AL539_18285) - 1806757..1806906 (-) 150 Protein_1607 MSHA biogenesis protein MshI -
  AL539_RS10060 (AL539_18290) csrD 1806918..1808927 (-) 2010 WP_005381201.1 RNase E specificity factor CsrD -
  AL539_RS10065 (AL539_18295) ssb 1809170..1809709 (-) 540 WP_005381235.1 single-stranded DNA-binding protein Machinery gene
  AL539_RS10070 (AL539_18300) qstR 1809987..1810631 (+) 645 WP_005381237.1 LuxR C-terminal-related transcriptional regulator Regulator
  AL539_RS10075 (AL539_18305) galU 1810791..1811663 (+) 873 WP_005381239.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  AL539_RS10080 (AL539_18310) uvrA 1811813..1814635 (+) 2823 WP_104975640.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19892.93 Da        Isoelectric Point: 4.9164

>NTDB_id=168082 AL539_RS10065 WP_005381235.1 1809170..1809709(-) (ssb) [Vibrio alginolyticus strain FDAARGOS_108]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGGAPMGGQQQQQGGWGQPQQPAQQQYNAPQQQQPQQQAPQ
QSQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=168082 AL539_RS10065 WP_005381235.1 1809170..1809709(-) (ssb) [Vibrio alginolyticus strain FDAARGOS_108]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCGAATGG
CGGTGCAGTAGCAAACATTACTATTGCGACTTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACGG
AATGGCACCGTGTTGTGTTGTTCGGCAAACTTGCGGAAGTAGCAGGTGAGTACTTGCGTAAAGGCTCTCAAGTTTACATT
GAAGGGCAACTGCAAACTCGCAAATGGCAAGATCAAAGTGGCCAAGATCGCTACTCAACTGAGGTAGTTGTTCAAGGCTT
CAATGGTGTTATGCAAATGCTTGGCGGTCGTGCTCAAGGTGGCGGCGCACCAATGGGCGGTCAACAGCAGCAACAAGGTG
GATGGGGTCAGCCTCAACAGCCAGCTCAGCAGCAGTACAATGCGCCTCAGCAACAGCAACCACAACAACAGGCTCCGCAG
CAATCACAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80.328

100

0.821
  ssb Glaesserella parasuis strain SC1401

54.922

100

0.592
  ssb Neisseria meningitidis MC58

46.328

98.883

0.458
  ssb Neisseria gonorrhoeae MS11

46.328

98.883

0.458

Multiple sequence alignment