Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   AL549_RS20110 Genome accession   NZ_CP014049
Coordinates   2493118..2493708 (-) Length   196 a.a.
NCBI ID   WP_011079353.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FDAARGOS_119     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2488118..2498708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL549_RS20085 (AL549_18555) aroB 2488391..2489482 (-) 1092 WP_061058951.1 3-dehydroquinate synthase -
  AL549_RS20090 (AL549_18560) aroK 2489515..2490033 (-) 519 WP_011079357.1 shikimate kinase AroK -
  AL549_RS20095 (AL549_18565) pilQ 2490235..2492019 (-) 1785 WP_011079356.1 type IV pilus secretin PilQ Machinery gene
  AL549_RS20100 (AL549_18570) pilP 2492033..2492545 (-) 513 WP_011079355.1 pilus assembly protein PilP Machinery gene
  AL549_RS20105 (AL549_18575) pilO 2492535..2493125 (-) 591 WP_011079354.1 type 4a pilus biogenesis protein PilO Machinery gene
  AL549_RS20110 (AL549_18580) pilN 2493118..2493708 (-) 591 WP_011079353.1 PilN domain-containing protein Machinery gene
  AL549_RS20115 (AL549_18585) pilM 2493698..2494705 (-) 1008 WP_011151279.1 type IV pilus assembly protein PilM Machinery gene
  AL549_RS20120 (AL549_18590) - 2494845..2497358 (+) 2514 WP_061058952.1 penicillin-binding protein 1A -
  AL549_RS20125 (AL549_18595) oxyR 2497425..2498324 (-) 900 WP_011079350.1 DNA-binding transcriptional regulator OxyR -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 22672.91 Da        Isoelectric Point: 7.6441

>NTDB_id=168031 AL549_RS20110 WP_011079353.1 2493118..2493708(-) (pilN) [Vibrio vulnificus strain FDAARGOS_119]
MQHKINLLPWREHKREEHKRRFVSLVALGALIAVGIQWGIGQYFSYQQRLQQERLDYLTHYIAQLDQRIQAMNIAKEEHS
QILARLKVVESLQAERNKTTAFMNLMTELIPEGVYVDKIKMNTNDVELAGISDSTARLATMLDNLERSTFLKEVEMHSIV
HDKKRFGKSFQTFTVSFVFDEHADSANTLAKEGNHG

Nucleotide


Download         Length: 591 bp        

>NTDB_id=168031 AL549_RS20110 WP_011079353.1 2493118..2493708(-) (pilN) [Vibrio vulnificus strain FDAARGOS_119]
ATGCAGCATAAGATCAACCTGTTACCTTGGCGTGAACACAAGCGTGAGGAGCATAAACGTCGTTTTGTCAGTCTGGTCGC
ATTAGGTGCCCTGATCGCGGTCGGTATTCAGTGGGGCATTGGCCAGTACTTTTCATACCAACAACGTTTGCAGCAAGAGC
GTCTCGATTATCTTACCCACTATATCGCACAGTTGGATCAGCGTATCCAAGCGATGAACATTGCCAAGGAAGAGCATAGC
CAGATCCTCGCTCGACTCAAGGTTGTCGAGTCGCTTCAAGCGGAACGCAACAAAACCACCGCATTTATGAACTTGATGAC
GGAACTGATCCCAGAGGGGGTGTATGTCGACAAGATCAAAATGAACACCAACGACGTTGAGTTGGCTGGCATAAGCGATA
GTACCGCTCGACTCGCCACCATGTTGGATAATTTGGAACGTTCCACCTTTCTAAAAGAAGTGGAGATGCATTCGATTGTT
CATGACAAGAAGCGTTTTGGTAAGAGCTTCCAGACGTTTACCGTTTCTTTTGTGTTTGATGAACATGCCGATTCTGCCAA
TACGTTGGCCAAGGAGGGGAATCATGGCTAG

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(102-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio campbellii strain DS40M4

67.956

92.347

0.628
  pilN Vibrio cholerae strain A1552

63.277

90.306

0.571

Multiple sequence alignment