Detailed information NTG0167978

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AL464_RS07510
• Genome accession: NZ_CP014046
• Coordinates: 1449529..1450398 (-)
• Length: 289 a.a.
• NCBI ID: WP_025501249.1
• Uniprot ID: A0AA46L6W6
• Organism: Vibrio parahaemolyticus strain ATCC 17802
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1444529..1455398

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AL464_RS07475 (AL464_06945)	rpsP	1445477..1445725 (+)	249	WP_005379962.1	30S ribosomal protein S16	-
AL464_RS07480 (AL464_06950)	rimM	1445754..1446302 (+)	549	WP_005462552.1	ribosome maturation factor RimM	-
AL464_RS07485 (AL464_06955)	trmD	1446330..1447073 (+)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
AL464_RS07490 (AL464_06960)	rplS	1447115..1447468 (+)	354	WP_005462554.1	50S ribosomal protein L19	-
AL464_RS07495 (AL464_06965)	yacG	1447883..1448077 (-)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
AL464_RS07500 (AL464_06970)	zapD	1448146..1448886 (-)	741	WP_023624252.1	cell division protein ZapD	-
AL464_RS07505 (AL464_06975)	coaE	1448914..1449528 (-)	615	WP_005480887.1	dephospho-CoA kinase	-
AL464_RS07510 (AL464_06980)	pilD	1449529..1450398 (-)	870	WP_025501249.1	prepilin peptidase	Machinery gene
AL464_RS07515 (AL464_06985)	pilC	1450463..1451686 (-)	1224	WP_029804706.1	type II secretion system F family protein	Machinery gene
AL464_RS07520 (AL464_06990)	pilB	1451710..1453395 (-)	1686	WP_029804705.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AL464_RS07525 (AL464_06995)	-	1453397..1453849 (-)	453	WP_029846089.1	pilin	-
AL464_RS07530 (AL464_07000)	nadC	1454113..1455000 (-)	888	WP_025523107.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32377.47 Da
• Isoelectric Point: 7.1970

>NTDB_id=167978 AL464_RS07510 WP_025501249.1 1449529..1450398(-) (pilD) [Vibrio parahaemolyticus strain ATCC 17802]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=167978 AL464_RS07510 WP_025501249.1 1449529..1450398(-) (pilD) [Vibrio parahaemolyticus strain ATCC 17802]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTGGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTAGTCATTTATCGGCTACCTAAAATTATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCTGTAATCAGCTGGCTACTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGATATCC
GCTGATAGAATTACTCACTGCTGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGGTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTAGTCCAGTTACGACTACAAAAACAAGGTATAGAGAAAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTAAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	89.619	100	0.896
pilD	Vibrio cholerae strain A1552	73.611	99.654	0.734
pilD	Acinetobacter baumannii D1279779	52.612	92.734	0.488
pilD	Acinetobacter nosocomialis M2	52.239	92.734	0.484
pilD	Neisseria gonorrhoeae MS11	46.739	95.502	0.446