Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | AL545_RS10080 | Genome accession | NZ_CP014045 |
| Coordinates | 400803..401342 (+) | Length | 179 a.a. |
| NCBI ID | WP_005387798.1 | Uniprot ID | A0A2I3CBE0 |
| Organism | Vibrio alginolyticus strain FDAARGOS_114 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 395803..406342
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AL545_RS10065 (AL545_10070) | uvrA | 395877..398699 (-) | 2823 | WP_005381241.1 | excinuclease ABC subunit UvrA | - |
| AL545_RS10070 (AL545_10075) | galU | 398849..399721 (-) | 873 | WP_005381239.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| AL545_RS10075 (AL545_10080) | qstR | 399881..400525 (-) | 645 | WP_005381237.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| AL545_RS10080 (AL545_10085) | ssb | 400803..401342 (+) | 540 | WP_005387798.1 | single-stranded DNA-binding protein | Machinery gene |
| AL545_RS10085 (AL545_10090) | csrD | 401584..403593 (+) | 2010 | WP_005381201.1 | RNase E specificity factor CsrD | - |
| AL545_RS10090 (AL545_10095) | - | 403605..405050 (+) | 1446 | WP_005387799.1 | hypothetical protein | - |
| AL545_RS10095 (AL545_10100) | gspM | 405047..405697 (+) | 651 | WP_005381197.1 | type II secretion system protein GspM | - |
| AL545_RS10100 (AL545_10105) | - | 405690..406022 (+) | 333 | WP_005381196.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 179 a.a. Molecular weight: 19902.97 Da Isoelectric Point: 4.9164
>NTDB_id=167919 AL545_RS10080 WP_005387798.1 400803..401342(+) (ssb) [Vibrio alginolyticus strain FDAARGOS_114]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGGAPMGGQQQQQGGWGQPQQPAQQQYNAPQQQQPQQQAPQ
QPQQQYNEPPMDFDDDIPF
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGGAPMGGQQQQQGGWGQPQQPAQQQYNAPQQQQPQQQAPQ
QPQQQYNEPPMDFDDDIPF
Nucleotide
Download Length: 540 bp
>NTDB_id=167919 AL545_RS10080 WP_005387798.1 400803..401342(+) (ssb) [Vibrio alginolyticus strain FDAARGOS_114]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCGAATGG
CGGTGCAGTAGCAAACATTACTATTGCGACTTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACGG
AATGGCACCGTGTTGTGTTGTTCGGCAAACTTGCGGAAGTAGCAGGTGAGTATTTGCGTAAAGGCTCTCAAGTTTACATT
GAAGGGCAACTGCAAACTCGCAAATGGCAAGATCAAAGTGGTCAAGATCGCTACTCAACTGAAGTCGTTGTTCAAGGCTT
CAATGGTGTGATGCAAATGCTTGGCGGTCGTGCTCAAGGTGGCGGCGCACCTATGGGCGGTCAACAGCAGCAGCAAGGTG
GATGGGGTCAGCCTCAACAGCCAGCTCAGCAGCAGTACAATGCGCCTCAGCAACAGCAACCACAACAACAGGCTCCGCAG
CAACCACAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATCCCGTTCTAA
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCGAATGG
CGGTGCAGTAGCAAACATTACTATTGCGACTTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACGG
AATGGCACCGTGTTGTGTTGTTCGGCAAACTTGCGGAAGTAGCAGGTGAGTATTTGCGTAAAGGCTCTCAAGTTTACATT
GAAGGGCAACTGCAAACTCGCAAATGGCAAGATCAAAGTGGTCAAGATCGCTACTCAACTGAAGTCGTTGTTCAAGGCTT
CAATGGTGTGATGCAAATGCTTGGCGGTCGTGCTCAAGGTGGCGGCGCACCTATGGGCGGTCAACAGCAGCAGCAAGGTG
GATGGGGTCAGCCTCAACAGCCAGCTCAGCAGCAGTACAATGCGCCTCAGCAACAGCAACCACAACAACAGGCTCCGCAG
CAACCACAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATCCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
79.781 |
100 |
0.816 |
| ssb | Glaesserella parasuis strain SC1401 |
54.922 |
100 |
0.592 |
| ssb | Neisseria meningitidis MC58 |
45.405 |
100 |
0.469 |
| ssb | Neisseria gonorrhoeae MS11 |
46.369 |
100 |
0.464 |