Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   AL543_RS15840 Genome accession   NZ_CP014043
Coordinates   1886424..1887014 (+) Length   196 a.a.
NCBI ID   WP_001005359.1    Uniprot ID   -
Organism   Vibrio mimicus strain FDAARGOS_112     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1881424..1892014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL543_RS15820 (AL543_15055) panP 1881724..1883370 (-) 1647 WP_061052411.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -
  AL543_RS15825 (AL543_15060) - 1883480..1883989 (-) 510 WP_000826837.1 hypothetical protein -
  AL543_RS15830 (AL543_15065) - 1884199..1885104 (-) 906 WP_061052412.1 lysine exporter LysO family protein -
  AL543_RS15835 (AL543_15070) - 1885125..1886045 (-) 921 WP_061052413.1 HDOD domain-containing protein -
  AL543_RS15840 (AL543_15075) tfoX 1886424..1887014 (+) 591 WP_001005359.1 TfoX/Sxy family DNA transformation protein Regulator
  AL543_RS15845 (AL543_15080) - 1887084..1887638 (-) 555 WP_001232586.1 hypothetical protein -
  AL543_RS15855 (AL543_15090) - 1887829..1888326 (-) 498 WP_001031958.1 response regulator -
  AL543_RS15860 (AL543_15095) - 1888323..1890272 (-) 1950 WP_061052414.1 ATP-binding protein -
  AL543_RS15865 (AL543_15100) - 1890495..1891760 (+) 1266 WP_061052415.1 DUF945 family protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 22878.05 Da        Isoelectric Point: 6.4942

>NTDB_id=167895 AL543_RS15840 WP_001005359.1 1886424..1887014(+) (tfoX) [Vibrio mimicus strain FDAARGOS_112]
MNEQQFFDYVIKFGAYQKRSMFGGIGLFQHDAMYVLVSDDRIFVRGGEELDPELVALGCEKYRHVKKQTTATVNYYDVTD
LYEQNHPELDSIIERSIQFSVNQREFQRSAASRRLRDLPNMQLTLERMVKKAGIDDVETFMSLGAPEVFNKVREAYGSDV
DVKLLWKFAGAIEGIHWKLLQEPRKRQLLESCQQRQ

Nucleotide


Download         Length: 591 bp        

>NTDB_id=167895 AL543_RS15840 WP_001005359.1 1886424..1887014(+) (tfoX) [Vibrio mimicus strain FDAARGOS_112]
ATGAATGAGCAACAGTTTTTCGACTACGTAATTAAGTTTGGCGCATACCAAAAACGCTCTATGTTTGGCGGAATTGGACT
ATTTCAACACGACGCTATGTATGTGTTGGTCAGTGATGATCGTATTTTTGTTCGCGGTGGCGAAGAACTCGATCCTGAGC
TGGTGGCTTTAGGCTGTGAAAAATATCGCCATGTAAAAAAACAGACCACGGCAACAGTAAATTATTACGATGTCACTGAT
CTCTATGAACAAAATCATCCAGAGCTAGACTCTATCATCGAACGTTCTATTCAATTTTCGGTAAATCAGCGCGAATTTCA
GCGCTCAGCCGCAAGTCGTCGTTTACGTGACTTGCCAAACATGCAGCTCACTCTTGAACGTATGGTGAAAAAAGCGGGTA
TTGATGATGTCGAAACGTTTATGAGCTTGGGCGCACCAGAAGTATTTAATAAAGTGCGTGAAGCTTATGGCAGTGATGTC
GATGTGAAATTGCTATGGAAATTTGCAGGAGCAATTGAGGGCATTCATTGGAAGCTTCTGCAAGAGCCGCGTAAACGCCA
ATTGCTTGAAAGCTGTCAGCAACGTCAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(112-190)

TfoX N-terminal domain (TfoX_N)

(10-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

96.41

99.49

0.959
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

96.41

99.49

0.959
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

96.41

99.49

0.959
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

96.41

99.49

0.959
  tfoX Vibrio cholerae strain A1552

96.41

99.49

0.959
  tfoX Vibrio campbellii strain DS40M4

69.43

98.469

0.684
  tfoX Vibrio parahaemolyticus RIMD 2210633

69.43

98.469

0.684
  tfoX Aliivibrio fischeri ES114

59.574

95.918

0.571

Multiple sequence alignment