Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | AL541_RS14100 | Genome accession | NZ_CP014040 |
| Coordinates | 2823149..2823742 (-) | Length | 197 a.a. |
| NCBI ID | WP_064354357.1 | Uniprot ID | A0AAW7A2J1 |
| Organism | Vibrio alginolyticus strain FDAARGOS_110 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2818149..2828742
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AL541_RS14080 (AL541_22450) | aroB | 2819034..2820134 (-) | 1101 | WP_005381318.1 | 3-dehydroquinate synthase | - |
| AL541_RS14085 (AL541_22455) | aroK | 2820167..2820685 (-) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| AL541_RS14090 (AL541_22460) | pilQ | 2820873..2822618 (-) | 1746 | WP_171053517.1 | type IV pilus secretin PilQ | Machinery gene |
| AL541_RS14095 (AL541_22465) | pilP | 2822644..2823159 (-) | 516 | WP_005382766.1 | pilus assembly protein PilP | Machinery gene |
| AL541_RS14100 (AL541_22470) | pilO | 2823149..2823742 (-) | 594 | WP_064354357.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| AL541_RS14105 (AL541_22475) | pilN | 2823735..2824310 (-) | 576 | WP_054577259.1 | PilN domain-containing protein | Machinery gene |
| AL541_RS14110 (AL541_22480) | pilM | 2824294..2825310 (-) | 1017 | WP_017821733.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| AL541_RS14115 (AL541_22485) | - | 2825455..2828016 (+) | 2562 | WP_005381325.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 197 a.a. Molecular weight: 23029.56 Da Isoelectric Point: 5.0885
>NTDB_id=167842 AL541_RS14100 WP_064354357.1 2823149..2823742(-) (pilO) [Vibrio alginolyticus strain FDAARGOS_110]
MVDWQDLEIDEMAEWPLLPQIIVIALLIMVIQGLGYWFYLKPKDEQLNHLIQQEQTLKVALKIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSEHFLYRLPLNIELTGDFHDIGHFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEETKNDK
MVDWQDLEIDEMAEWPLLPQIIVIALLIMVIQGLGYWFYLKPKDEQLNHLIQQEQTLKVALKIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSEHFLYRLPLNIELTGDFHDIGHFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEETKNDK
Nucleotide
Download Length: 594 bp
>NTDB_id=167842 AL541_RS14100 WP_064354357.1 2823149..2823742(-) (pilO) [Vibrio alginolyticus strain FDAARGOS_110]
GTGGTTGATTGGCAGGATCTCGAAATCGATGAAATGGCCGAGTGGCCATTGTTGCCCCAGATTATAGTAATCGCGCTTCT
GATCATGGTGATTCAAGGCTTAGGTTATTGGTTTTACCTTAAACCGAAAGACGAACAGTTGAATCACTTGATCCAGCAGG
AGCAGACACTCAAGGTGGCATTGAAGATCAAAGCGAACAAAGTGGCAGCGTTGCCTCAGCTTCAATCTCAATTGGATGAA
CTTACCACTCGTTACGAGTTATTACTGCAACAACTGCCTGCGCAAAAAGAGCTGGCTACAATGCTCGCTTCAGTGAATGA
GCTTGGCATCGACAATAAGCTGACTTTCACCCGAATCGACTGGGGCGAAAAACAATCAGAGCACTTCCTTTATCGTCTTC
CTTTAAACATAGAGTTAACGGGCGACTTTCATGACATCGGCCATTTTTCTCAGGCGATAGCGACGCTACCTCGAATCATC
ACGTTTAAAGATGTGACTTGGCAACGTGTCAGCCAAGAGAGTGAAACCCTGCACTTTCGGGTGCGCGCTAACACCTATCA
GTTTAAGCCGGAGGAGACGAAAAATGACAAGTAA
GTGGTTGATTGGCAGGATCTCGAAATCGATGAAATGGCCGAGTGGCCATTGTTGCCCCAGATTATAGTAATCGCGCTTCT
GATCATGGTGATTCAAGGCTTAGGTTATTGGTTTTACCTTAAACCGAAAGACGAACAGTTGAATCACTTGATCCAGCAGG
AGCAGACACTCAAGGTGGCATTGAAGATCAAAGCGAACAAAGTGGCAGCGTTGCCTCAGCTTCAATCTCAATTGGATGAA
CTTACCACTCGTTACGAGTTATTACTGCAACAACTGCCTGCGCAAAAAGAGCTGGCTACAATGCTCGCTTCAGTGAATGA
GCTTGGCATCGACAATAAGCTGACTTTCACCCGAATCGACTGGGGCGAAAAACAATCAGAGCACTTCCTTTATCGTCTTC
CTTTAAACATAGAGTTAACGGGCGACTTTCATGACATCGGCCATTTTTCTCAGGCGATAGCGACGCTACCTCGAATCATC
ACGTTTAAAGATGTGACTTGGCAACGTGTCAGCCAAGAGAGTGAAACCCTGCACTTTCGGGTGCGCGCTAACACCTATCA
GTTTAAGCCGGAGGAGACGAAAAATGACAAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio campbellii strain DS40M4 |
86.842 |
96.447 |
0.838 |
| pilO | Vibrio cholerae strain A1552 |
70.157 |
96.954 |
0.68 |