Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | A4W88_RS09400 | Genome accession | NZ_CP017275 |
| Coordinates | 1823441..1825909 (-) | Length | 822 a.a. |
| NCBI ID | WP_056948136.1 | Uniprot ID | - |
| Organism | Latilactobacillus sakei strain TMW 1.1398 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1818441..1830909
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A4W88_RS09385 (A4W88_09310) | - | 1819899..1820231 (-) | 333 | WP_011375458.1 | carboxymuconolactone decarboxylase family protein | - |
| A4W88_RS09390 (A4W88_09315) | - | 1820424..1821308 (+) | 885 | WP_061827363.1 | phosphate ABC transporter substrate-binding protein PstS family protein | - |
| A4W88_RS09395 (A4W88_09320) | - | 1821446..1823371 (+) | 1926 | WP_056948138.1 | fructose-bisphosphatase class III | - |
| A4W88_RS09400 (A4W88_09325) | clpC | 1823441..1825909 (-) | 2469 | WP_056948136.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| A4W88_RS09405 (A4W88_09330) | - | 1825927..1826397 (-) | 471 | WP_016265729.1 | CtsR family transcriptional regulator | - |
Sequence
Protein
Download Length: 822 a.a. Molecular weight: 90523.90 Da Isoelectric Point: 6.2093
>NTDB_id=167841 A4W88_RS09400 WP_056948136.1 1823441..1825909(-) (clpC) [Latilactobacillus sakei strain TMW 1.1398]
MNNLFTPSAKNVLMLAQEQAKKFNHHALGTEHLLLALVLESEGIAGNALRELGVTPTDVLEEIERLTGYGDSIVAMGVGG
YLPYSPKAKQVLDLARVESQQANSVKIGTAHLLLALLRDDDIIAARILLNLGLSLAKTRQLLLQKMGIDAATAKKRAKAS
AKKVDQEGTPTLNQLARDLTQMARENQIDPVVGRDSEVKRLVQILARRSKNNPVLIGEPGVGKTAIAEGFAQRIINGDVP
SDMQQKRLMMLDMGSLVAGTKYRGEFEDRLKKIIEEIHEDGQVILFIDELHTLIGAGGAEGAIDASNILKPALARGELQL
IGATTLDEYQKYIEKDAALERRFATVTVDEPTPEDAEQILHGLRPRYEEHHGITISDEALHEAVILANRYITNRFLPDKA
IDLMDEAAAKVRLDAVNQKSPIDRLETELQSLAKEKEVAVGAQDFEKAAAIHEKEIIAKAKMAKRQAAEQENGVRTDIQV
QPEDIAQVVAQWTGVPVTQLQRKESERLLQLEKVLHERVVGQEEAISAVARAIRRARSGLKDPKRPIGSFMFLGPTGVGK
TELAKALAEAMFGSEDNLIRVDMSEYMERYSTSRLVGAAPGYVGYDEGGQLTEKVRNKPYSVVLFDEVEKAHPDVFNILL
QVLDDGYLTDSKGRKVDFRNTIMIMTSNLGATALRDDKSVGFGVKDVTADYKAMQGRILEELKKSFRPEFLNRIDETVVF
HSLTQPELREIVKIMSKGILNRLAEQGVKIKMTAAAMDVVAKAGFDPEYGARPIRRALQTQVEDRLSEALLAGEITTDTP
VTIGATKGEITINSKKEKTTVK
MNNLFTPSAKNVLMLAQEQAKKFNHHALGTEHLLLALVLESEGIAGNALRELGVTPTDVLEEIERLTGYGDSIVAMGVGG
YLPYSPKAKQVLDLARVESQQANSVKIGTAHLLLALLRDDDIIAARILLNLGLSLAKTRQLLLQKMGIDAATAKKRAKAS
AKKVDQEGTPTLNQLARDLTQMARENQIDPVVGRDSEVKRLVQILARRSKNNPVLIGEPGVGKTAIAEGFAQRIINGDVP
SDMQQKRLMMLDMGSLVAGTKYRGEFEDRLKKIIEEIHEDGQVILFIDELHTLIGAGGAEGAIDASNILKPALARGELQL
IGATTLDEYQKYIEKDAALERRFATVTVDEPTPEDAEQILHGLRPRYEEHHGITISDEALHEAVILANRYITNRFLPDKA
IDLMDEAAAKVRLDAVNQKSPIDRLETELQSLAKEKEVAVGAQDFEKAAAIHEKEIIAKAKMAKRQAAEQENGVRTDIQV
QPEDIAQVVAQWTGVPVTQLQRKESERLLQLEKVLHERVVGQEEAISAVARAIRRARSGLKDPKRPIGSFMFLGPTGVGK
TELAKALAEAMFGSEDNLIRVDMSEYMERYSTSRLVGAAPGYVGYDEGGQLTEKVRNKPYSVVLFDEVEKAHPDVFNILL
QVLDDGYLTDSKGRKVDFRNTIMIMTSNLGATALRDDKSVGFGVKDVTADYKAMQGRILEELKKSFRPEFLNRIDETVVF
HSLTQPELREIVKIMSKGILNRLAEQGVKIKMTAAAMDVVAKAGFDPEYGARPIRRALQTQVEDRLSEALLAGEITTDTP
VTIGATKGEITINSKKEKTTVK
Nucleotide
Download Length: 2469 bp
>NTDB_id=167841 A4W88_RS09400 WP_056948136.1 1823441..1825909(-) (clpC) [Latilactobacillus sakei strain TMW 1.1398]
ATGAATAATCTATTTACACCAAGTGCCAAAAACGTTTTAATGTTAGCGCAAGAACAAGCTAAGAAGTTTAATCATCATGC
ATTAGGGACGGAACATCTGTTATTAGCGCTCGTCCTCGAAAGCGAAGGGATTGCTGGGAACGCACTACGTGAACTCGGTG
TGACACCCACTGATGTCTTGGAAGAAATTGAACGCTTAACCGGTTATGGTGATTCAATCGTTGCCATGGGTGTGGGCGGC
TATTTGCCATACTCACCTAAAGCCAAACAAGTGCTGGATTTAGCGCGCGTTGAATCACAACAAGCTAACTCAGTTAAAAT
CGGGACGGCACACCTATTATTAGCGTTATTACGCGATGATGACATTATTGCGGCCCGTATTCTATTAAACTTAGGCCTCA
GTTTAGCCAAAACACGTCAATTATTACTCCAAAAGATGGGGATTGATGCTGCAACTGCTAAGAAACGCGCTAAAGCCAGT
GCTAAAAAGGTTGATCAAGAAGGCACGCCTACTTTGAATCAATTGGCACGCGATTTAACCCAAATGGCCCGCGAAAATCA
AATTGATCCAGTCGTTGGTCGTGATTCAGAAGTTAAACGACTCGTGCAAATCTTAGCGCGTCGATCTAAAAATAATCCAG
TTTTAATTGGCGAACCCGGTGTCGGTAAAACGGCGATTGCTGAAGGCTTTGCCCAACGGATTATCAACGGTGATGTGCCA
AGCGACATGCAACAAAAACGGTTAATGATGCTTGATATGGGCTCATTAGTCGCTGGCACTAAGTATCGTGGGGAATTTGA
AGATCGTCTCAAGAAGATTATTGAAGAAATCCATGAAGATGGCCAAGTAATCCTCTTTATCGATGAATTGCATACCTTAA
TTGGTGCTGGTGGGGCAGAAGGCGCAATTGACGCCTCAAACATCTTGAAACCCGCCCTCGCCCGTGGCGAATTGCAATTA
ATCGGTGCAACAACGCTTGATGAATACCAAAAATACATCGAAAAAGATGCAGCCTTAGAACGGCGTTTCGCGACGGTGAC
GGTTGATGAACCAACACCAGAAGATGCGGAACAAATCTTACACGGGTTACGACCACGTTATGAAGAACATCACGGCATCA
CAATTTCTGATGAAGCATTACACGAAGCCGTTATTTTAGCGAACCGTTATATCACAAACCGTTTCTTACCTGATAAGGCA
ATTGATTTGATGGATGAGGCGGCTGCAAAGGTCAGATTAGATGCTGTTAACCAAAAATCACCAATCGATCGCTTAGAAAC
TGAATTGCAATCGTTGGCGAAAGAAAAAGAAGTCGCAGTTGGTGCACAAGACTTTGAAAAAGCCGCTGCCATTCACGAAA
AAGAAATTATTGCTAAGGCTAAAATGGCTAAGCGCCAAGCAGCCGAACAAGAAAATGGTGTCCGGACAGATATTCAAGTC
CAACCAGAAGATATCGCACAAGTCGTTGCCCAATGGACGGGTGTGCCAGTCACTCAATTGCAACGTAAAGAAAGCGAACG
CTTGTTGCAACTTGAAAAAGTCTTGCATGAACGCGTTGTTGGCCAAGAAGAAGCGATTTCAGCTGTGGCCCGTGCAATTC
GTCGGGCCCGCAGTGGTTTGAAGGATCCTAAGCGCCCAATCGGTTCATTTATGTTCTTAGGCCCTACTGGGGTTGGGAAG
ACCGAATTGGCCAAAGCATTGGCAGAAGCCATGTTTGGGTCTGAAGACAACTTGATTCGGGTTGATATGTCAGAATACAT
GGAACGTTACAGTACGAGTCGTTTAGTCGGGGCAGCACCTGGTTACGTCGGTTATGACGAAGGTGGCCAATTAACTGAAA
AAGTCCGCAATAAACCTTATTCCGTTGTTCTTTTTGATGAAGTTGAAAAGGCTCATCCAGACGTCTTCAATATCCTGTTA
CAAGTCTTAGATGATGGTTATTTGACAGATTCTAAGGGTCGGAAAGTTGATTTCCGGAATACAATCATGATCATGACGTC
TAACTTAGGGGCAACAGCCTTACGTGATGACAAGTCAGTTGGTTTTGGGGTCAAAGATGTCACTGCCGATTACAAAGCAA
TGCAAGGTCGGATTTTGGAAGAATTGAAGAAGTCATTCCGCCCAGAATTCTTAAACCGAATCGACGAAACGGTGGTCTTC
CATTCATTAACACAACCTGAATTGCGTGAAATCGTCAAGATTATGTCCAAAGGCATCTTAAACCGCTTAGCGGAACAAGG
TGTCAAGATCAAGATGACTGCTGCAGCGATGGATGTTGTGGCTAAAGCCGGCTTTGATCCAGAATACGGTGCGCGCCCAA
TTCGCCGTGCATTACAAACACAAGTTGAAGATCGCTTGAGTGAAGCCTTATTGGCTGGTGAAATCACGACTGATACACCA
GTGACAATTGGGGCTACCAAAGGTGAAATTACCATTAATAGTAAAAAAGAAAAAACAACTGTTAAATAA
ATGAATAATCTATTTACACCAAGTGCCAAAAACGTTTTAATGTTAGCGCAAGAACAAGCTAAGAAGTTTAATCATCATGC
ATTAGGGACGGAACATCTGTTATTAGCGCTCGTCCTCGAAAGCGAAGGGATTGCTGGGAACGCACTACGTGAACTCGGTG
TGACACCCACTGATGTCTTGGAAGAAATTGAACGCTTAACCGGTTATGGTGATTCAATCGTTGCCATGGGTGTGGGCGGC
TATTTGCCATACTCACCTAAAGCCAAACAAGTGCTGGATTTAGCGCGCGTTGAATCACAACAAGCTAACTCAGTTAAAAT
CGGGACGGCACACCTATTATTAGCGTTATTACGCGATGATGACATTATTGCGGCCCGTATTCTATTAAACTTAGGCCTCA
GTTTAGCCAAAACACGTCAATTATTACTCCAAAAGATGGGGATTGATGCTGCAACTGCTAAGAAACGCGCTAAAGCCAGT
GCTAAAAAGGTTGATCAAGAAGGCACGCCTACTTTGAATCAATTGGCACGCGATTTAACCCAAATGGCCCGCGAAAATCA
AATTGATCCAGTCGTTGGTCGTGATTCAGAAGTTAAACGACTCGTGCAAATCTTAGCGCGTCGATCTAAAAATAATCCAG
TTTTAATTGGCGAACCCGGTGTCGGTAAAACGGCGATTGCTGAAGGCTTTGCCCAACGGATTATCAACGGTGATGTGCCA
AGCGACATGCAACAAAAACGGTTAATGATGCTTGATATGGGCTCATTAGTCGCTGGCACTAAGTATCGTGGGGAATTTGA
AGATCGTCTCAAGAAGATTATTGAAGAAATCCATGAAGATGGCCAAGTAATCCTCTTTATCGATGAATTGCATACCTTAA
TTGGTGCTGGTGGGGCAGAAGGCGCAATTGACGCCTCAAACATCTTGAAACCCGCCCTCGCCCGTGGCGAATTGCAATTA
ATCGGTGCAACAACGCTTGATGAATACCAAAAATACATCGAAAAAGATGCAGCCTTAGAACGGCGTTTCGCGACGGTGAC
GGTTGATGAACCAACACCAGAAGATGCGGAACAAATCTTACACGGGTTACGACCACGTTATGAAGAACATCACGGCATCA
CAATTTCTGATGAAGCATTACACGAAGCCGTTATTTTAGCGAACCGTTATATCACAAACCGTTTCTTACCTGATAAGGCA
ATTGATTTGATGGATGAGGCGGCTGCAAAGGTCAGATTAGATGCTGTTAACCAAAAATCACCAATCGATCGCTTAGAAAC
TGAATTGCAATCGTTGGCGAAAGAAAAAGAAGTCGCAGTTGGTGCACAAGACTTTGAAAAAGCCGCTGCCATTCACGAAA
AAGAAATTATTGCTAAGGCTAAAATGGCTAAGCGCCAAGCAGCCGAACAAGAAAATGGTGTCCGGACAGATATTCAAGTC
CAACCAGAAGATATCGCACAAGTCGTTGCCCAATGGACGGGTGTGCCAGTCACTCAATTGCAACGTAAAGAAAGCGAACG
CTTGTTGCAACTTGAAAAAGTCTTGCATGAACGCGTTGTTGGCCAAGAAGAAGCGATTTCAGCTGTGGCCCGTGCAATTC
GTCGGGCCCGCAGTGGTTTGAAGGATCCTAAGCGCCCAATCGGTTCATTTATGTTCTTAGGCCCTACTGGGGTTGGGAAG
ACCGAATTGGCCAAAGCATTGGCAGAAGCCATGTTTGGGTCTGAAGACAACTTGATTCGGGTTGATATGTCAGAATACAT
GGAACGTTACAGTACGAGTCGTTTAGTCGGGGCAGCACCTGGTTACGTCGGTTATGACGAAGGTGGCCAATTAACTGAAA
AAGTCCGCAATAAACCTTATTCCGTTGTTCTTTTTGATGAAGTTGAAAAGGCTCATCCAGACGTCTTCAATATCCTGTTA
CAAGTCTTAGATGATGGTTATTTGACAGATTCTAAGGGTCGGAAAGTTGATTTCCGGAATACAATCATGATCATGACGTC
TAACTTAGGGGCAACAGCCTTACGTGATGACAAGTCAGTTGGTTTTGGGGTCAAAGATGTCACTGCCGATTACAAAGCAA
TGCAAGGTCGGATTTTGGAAGAATTGAAGAAGTCATTCCGCCCAGAATTCTTAAACCGAATCGACGAAACGGTGGTCTTC
CATTCATTAACACAACCTGAATTGCGTGAAATCGTCAAGATTATGTCCAAAGGCATCTTAAACCGCTTAGCGGAACAAGG
TGTCAAGATCAAGATGACTGCTGCAGCGATGGATGTTGTGGCTAAAGCCGGCTTTGATCCAGAATACGGTGCGCGCCCAA
TTCGCCGTGCATTACAAACACAAGTTGAAGATCGCTTGAGTGAAGCCTTATTGGCTGGTGAAATCACGACTGATACACCA
GTGACAATTGGGGCTACCAAAGGTGAAATTACCATTAATAGTAAAAAAGAAAAAACAACTGTTAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
57.056 |
100 |
0.571 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
54.701 |
99.635 |
0.545 |
| clpC | Streptococcus pneumoniae Rx1 |
49.695 |
99.635 |
0.495 |
| clpC | Streptococcus pneumoniae D39 |
49.695 |
99.635 |
0.495 |
| clpC | Streptococcus pneumoniae TIGR4 |
49.573 |
99.635 |
0.494 |
| clpC | Streptococcus thermophilus LMD-9 |
47.749 |
100 |
0.49 |
| clpC | Streptococcus thermophilus LMG 18311 |
47.406 |
100 |
0.489 |
| clpC | Streptococcus mutans UA159 |
47.857 |
100 |
0.489 |
| clpE | Streptococcus pneumoniae Rx1 |
49.158 |
79.44 |
0.391 |
| clpE | Streptococcus pneumoniae D39 |
49.158 |
79.44 |
0.391 |
| clpE | Streptococcus pneumoniae R6 |
49.158 |
79.44 |
0.391 |
| clpE | Streptococcus pneumoniae TIGR4 |
49.158 |
79.44 |
0.391 |
| clpE | Streptococcus mutans UA159 |
49.921 |
77.007 |
0.384 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
49.035 |
75.669 |
0.371 |