Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AL541_RS13870 Genome accession   NZ_CP014040
Coordinates   2772068..2772607 (-) Length   179 a.a.
NCBI ID   WP_017636205.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain FDAARGOS_110     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2767068..2777607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL541_RS13850 (AL541_22220) - 2767387..2767719 (-) 333 WP_005381196.1 hypothetical protein -
  AL541_RS13855 (AL541_22225) gspM 2767712..2768362 (-) 651 WP_005381197.1 type II secretion system protein GspM -
  AL541_RS13860 (AL541_22230) - 2768359..2769804 (-) 1446 WP_064368803.1 hypothetical protein -
  AL541_RS13865 (AL541_22235) csrD 2769816..2771825 (-) 2010 WP_005381201.1 RNase E specificity factor CsrD -
  AL541_RS13870 (AL541_22240) ssb 2772068..2772607 (-) 540 WP_017636205.1 single-stranded DNA-binding protein Machinery gene
  AL541_RS13875 (AL541_22245) qstR 2772885..2773529 (+) 645 WP_005381237.1 LuxR C-terminal-related transcriptional regulator Regulator
  AL541_RS13880 (AL541_22250) galU 2773689..2774561 (+) 873 WP_005381239.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  AL541_RS13885 (AL541_22255) uvrA 2774711..2777533 (+) 2823 WP_104979767.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19922.96 Da        Isoelectric Point: 4.9164

>NTDB_id=167838 AL541_RS13870 WP_017636205.1 2772068..2772607(-) (ssb) [Vibrio alginolyticus strain FDAARGOS_110]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGSAPMGGQQQQQGGWGQPQQPAQQQYNAPQQQQPQQQAPQ
QSQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=167838 AL541_RS13870 WP_017636205.1 2772068..2772607(-) (ssb) [Vibrio alginolyticus strain FDAARGOS_110]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCGAATGG
CGGTGCAGTAGCAAACATTACTATTGCGACTTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACGG
AATGGCACCGTGTTGTGTTGTTCGGCAAACTTGCGGAAGTAGCAGGTGAGTACTTGCGTAAAGGCTCTCAAGTTTACATT
GAAGGGCAACTGCAAACTCGCAAATGGCAAGATCAAAGTGGCCAAGATCGCTACTCAACGGAAGTCGTTGTTCAAGGCTT
CAATGGTGTGATGCAAATGCTTGGCGGTCGTGCTCAAGGTGGCAGCGCACCTATGGGCGGTCAACAGCAGCAACAAGGTG
GATGGGGTCAGCCTCAACAGCCAGCTCAGCAGCAGTACAATGCGCCTCAGCAACAGCAACCACAACAACAGGCTCCGCAG
CAATCACAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

79.781

100

0.816
  ssb Glaesserella parasuis strain SC1401

54.922

100

0.592
  ssb Neisseria gonorrhoeae MS11

45.763

98.883

0.453
  ssb Neisseria meningitidis MC58

45.198

98.883

0.447

Multiple sequence alignment