Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   AL538_RS15495 Genome accession   NZ_CP014038
Coordinates   3103085..3105343 (+) Length   752 a.a.
NCBI ID   WP_061065724.1    Uniprot ID   -
Organism   Vibrio harveyi strain FDAARGOS_107     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3098085..3110343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL538_RS15470 (AL538_14575) - 3098380..3098949 (-) 570 WP_009698318.1 PilZ domain-containing protein -
  AL538_RS15475 (AL538_14580) lolC 3099214..3100422 (+) 1209 WP_026000130.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  AL538_RS15480 (AL538_14585) lolD 3100415..3101122 (+) 708 WP_029790268.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  AL538_RS15485 (AL538_14590) lolE 3101125..3102369 (+) 1245 WP_061065723.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  AL538_RS15490 (AL538_14595) - 3102567..3103076 (-) 510 WP_005446692.1 DUF2062 domain-containing protein -
  AL538_RS15495 (AL538_14600) comEC 3103085..3105343 (+) 2259 WP_061065724.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AL538_RS15500 (AL538_14605) msbA 3105375..3107123 (+) 1749 WP_061065725.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  AL538_RS15505 (AL538_14610) lpxK 3107129..3108136 (+) 1008 WP_061065726.1 tetraacyldisaccharide 4'-kinase -
  AL538_RS15510 (AL538_14615) - 3108117..3108296 (+) 180 WP_005378451.1 Trm112 family protein -
  AL538_RS15515 (AL538_14620) kdsB 3108296..3109054 (+) 759 WP_061065727.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 752 a.a.        Molecular weight: 84625.15 Da        Isoelectric Point: 9.6057

>NTDB_id=167802 AL538_RS15495 WP_061065724.1 3103085..3105343(+) (comEC) [Vibrio harveyi strain FDAARGOS_107]
MTLLEKSLTLALFVASVISSAWWPTIPDWRWLLLGIIATGSIIKLRRGLLSIGVISGFMVVIIHGNVMEHQRQALFQAGV
NITINGKVDSPFTQISHGYEGIARVHQVNSQNLLPFFKPKIRLITPFPLAVNSEFTTEVTIKPIFGLLNEAGHDAEKQAV
GKGIVARATVSKDSAWLIRERSSLRTQIIAVVHKHIVQLEHFALIRALAFSDRTLLSRYDWQLLRDSGLLHLVSISGLHI
GMAFAFGMSFGVVVRYALPKFVFLPSFFGLATAFLYSWLADFSLPTTRAFSVCLIYLLFKSALIYWSAWRVLLLAVAIQL
CIEPFSALTMSFWLSYLSVIAVLFAVNCVQHSRGNWIRKLGTLFKIQLVLTVLIIPISGLFFAGTSLSSILYNLIFIPWF
GFVVVPLMFVALIITPFSVHLANMLWQWLDWMLVPLTWSLPFALGSWQSLSSQATLWVLALGVCVLSMRFLNRETSGVLF
LVITSLALWYERKSDGWRIDVLDVGHGLAVLLEKDGEVLLYDTGKTWAYGSIAEQVITPILYRRGFGSIDMFVVSHADSD
HAGGRAYIERHFAPVRKFSSQNYANYQPCIAGERWKWQALEFEVLWPPKLVKRAYNPHSCVIRVVDTKMDFKLLLTGDIE
AVSEWILVRNPDQLKSDVVIVPHHGSKSSSNPKFVEAIAPKLAIASLAKGNQWGMPANNVVLAYENANAKWLDTGNGGQI
SVLIEQENWYFETKRSETFDPWYRQMLRNGVE

Nucleotide


Download         Length: 2259 bp        

>NTDB_id=167802 AL538_RS15495 WP_061065724.1 3103085..3105343(+) (comEC) [Vibrio harveyi strain FDAARGOS_107]
ATGACTCTCTTAGAAAAAAGTTTGACCTTGGCTTTATTTGTAGCGAGCGTTATTTCGTCTGCATGGTGGCCGACGATACC
AGATTGGCGTTGGTTGCTGCTGGGAATAATTGCCACTGGCTCAATAATAAAATTACGACGTGGCTTATTGAGCATAGGCG
TAATTTCGGGCTTTATGGTTGTCATTATCCACGGCAATGTTATGGAGCATCAAAGACAAGCCCTGTTTCAAGCAGGGGTG
AATATTACCATAAATGGCAAAGTTGACAGCCCTTTTACGCAAATAAGTCACGGATATGAAGGAATTGCGCGTGTCCATCA
GGTGAATTCTCAAAACTTGTTACCTTTTTTTAAACCGAAAATCCGGTTGATAACGCCTTTCCCACTCGCAGTTAACAGTG
AGTTCACTACCGAAGTGACAATTAAACCCATCTTTGGGCTCTTAAACGAAGCAGGTCATGACGCCGAAAAGCAGGCAGTA
GGAAAGGGCATTGTCGCAAGGGCTACCGTTTCAAAGGATTCAGCGTGGCTTATTCGTGAGCGATCATCATTAAGAACGCA
AATTATCGCCGTCGTTCATAAGCACATCGTTCAGCTTGAACATTTCGCTCTTATTCGTGCTTTGGCGTTTAGTGACCGTA
CGCTTCTGTCTCGATATGACTGGCAACTCCTACGTGATAGTGGCTTACTGCATTTGGTTTCGATTTCGGGTTTACATATA
GGAATGGCGTTTGCTTTTGGTATGAGCTTTGGGGTTGTTGTTAGGTACGCTTTGCCAAAATTTGTCTTTTTACCTTCCTT
TTTTGGGCTTGCTACTGCTTTTTTGTATTCATGGTTAGCAGACTTCTCTTTGCCTACGACTCGAGCTTTTTCAGTATGTT
TGATTTACTTGTTATTCAAGTCTGCTTTGATTTATTGGAGCGCTTGGCGCGTGCTGCTCCTTGCTGTAGCAATACAGTTG
TGCATCGAGCCGTTTTCTGCACTCACTATGAGCTTTTGGCTGTCTTATCTCTCTGTTATCGCCGTTTTATTTGCAGTGAA
TTGTGTACAACATAGCCGTGGCAATTGGATTAGGAAACTGGGTACCTTATTCAAAATTCAGTTAGTACTCACTGTGTTGA
TCATTCCGATTAGTGGGTTGTTTTTTGCCGGGACGAGCCTCTCCTCTATTTTATATAACCTCATTTTTATCCCTTGGTTC
GGTTTTGTTGTCGTTCCACTGATGTTTGTTGCACTTATCATTACCCCGTTTTCAGTGCACTTGGCGAACATGCTGTGGCA
GTGGTTAGATTGGATGCTTGTACCCCTTACTTGGTCTTTGCCATTTGCTTTGGGGAGTTGGCAATCTCTTAGCTCACAGG
CAACGTTGTGGGTGCTGGCATTGGGTGTTTGTGTGCTTTCGATGCGATTTTTAAATCGAGAAACCTCAGGCGTTTTGTTC
TTGGTCATCACAAGTCTGGCGTTGTGGTATGAACGAAAATCCGATGGTTGGCGTATTGATGTGTTAGATGTTGGGCATGG
ACTTGCAGTACTCCTAGAAAAAGACGGTGAAGTGCTTTTATATGACACGGGTAAAACATGGGCTTATGGAAGTATTGCTG
AACAAGTTATTACCCCTATCTTGTATCGCAGAGGGTTCGGTTCTATCGACATGTTTGTCGTCAGTCACGCCGACTCAGAT
CATGCTGGAGGACGAGCATATATCGAAAGGCACTTCGCCCCAGTTCGTAAGTTTAGTAGCCAAAACTATGCTAACTACCA
ACCTTGTATTGCAGGGGAACGATGGAAATGGCAAGCGCTAGAATTTGAAGTTCTTTGGCCGCCGAAGTTGGTTAAACGTG
CATATAACCCACATTCATGCGTGATTCGTGTTGTCGATACCAAAATGGATTTTAAGTTGCTATTAACGGGCGATATTGAA
GCCGTTAGTGAATGGATCTTGGTGAGAAACCCCGATCAGTTAAAAAGTGATGTTGTGATTGTCCCGCATCACGGAAGTAA
GAGCTCTTCTAACCCCAAGTTTGTTGAAGCGATTGCCCCAAAACTGGCGATCGCATCTCTGGCAAAAGGGAATCAGTGGG
GAATGCCTGCAAATAACGTGGTTTTAGCGTACGAGAACGCCAATGCGAAATGGCTGGATACGGGGAATGGCGGTCAAATA
AGCGTCCTTATTGAGCAAGAGAATTGGTATTTTGAAACGAAACGAAGTGAGACATTTGACCCTTGGTATAGGCAGATGCT
GCGTAACGGAGTAGAATAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(208-467)

Metallo-beta-lactamase superfamily (Lactamase_B)

(504-685)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio campbellii strain DS40M4

75.266

100

0.753
  comEC Vibrio parahaemolyticus RIMD 2210633

64.894

100

0.649
  comEC Vibrio cholerae strain A1552

40.716

100

0.408

Multiple sequence alignment