Detailed information
Bioinformatically predicted
Overview
| Name | xerS | Type | Machinery gene |
| Locus tag | A4W88_RS05155 | Genome accession | NZ_CP017275 |
| Coordinates | 992207..993265 (+) | Length | 352 a.a. |
| NCBI ID | WP_025015780.1 | Uniprot ID | - |
| Organism | Latilactobacillus sakei strain TMW 1.1398 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 987207..998265
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A4W88_RS05125 (A4W88_05090) | - | 987346..987900 (+) | 555 | WP_251930935.1 | DegV family protein | - |
| A4W88_RS05130 (A4W88_05095) | - | 988028..988609 (+) | 582 | WP_076632505.1 | TetR/AcrR family transcriptional regulator | - |
| A4W88_RS05135 (A4W88_05100) | - | 988611..989612 (+) | 1002 | WP_076632504.1 | NADP-dependent oxidoreductase | - |
| A4W88_RS05140 (A4W88_05105) | - | 989643..990251 (+) | 609 | WP_251930838.1 | alpha/beta hydrolase | - |
| A4W88_RS05145 | - | 990277..990474 (+) | 198 | WP_251930839.1 | alpha/beta hydrolase | - |
| A4W88_RS05150 (A4W88_05110) | - | 990489..991409 (-) | 921 | WP_099947813.1 | IS30-like element ISLsa1 family transposase | - |
| A4W88_RS05155 (A4W88_05115) | xerS | 992207..993265 (+) | 1059 | WP_025015780.1 | tyrosine recombinase XerS | Machinery gene |
| A4W88_RS05160 (A4W88_05120) | thiT | 993479..994081 (+) | 603 | WP_011374670.1 | energy-coupled thiamine transporter ThiT | - |
| A4W88_RS05165 (A4W88_05125) | - | 994121..995914 (-) | 1794 | WP_025015778.1 | heavy metal translocating P-type ATPase | - |
| A4W88_RS05170 (A4W88_05130) | - | 996015..996368 (-) | 354 | WP_025015777.1 | hypothetical protein | - |
| A4W88_RS05175 (A4W88_05135) | - | 996425..997348 (-) | 924 | WP_011374673.1 | manganese-dependent inorganic pyrophosphatase | - |
Sequence
Protein
Download Length: 352 a.a. Molecular weight: 40719.63 Da Isoelectric Point: 9.1623
>NTDB_id=167802 A4W88_RS05155 WP_025015780.1 992207..993265(+) (xerS) [Latilactobacillus sakei strain TMW 1.1398]
MDQQRYLELCEQRLADLPDYVRKFYINRQANAYSSATLYQYLQEYVRFFSWLIDEQIVTVQTTKDIPLVALDKMKLEDIE
LYKIFLMNKRKANNHKLSFQAVNRSINALNALWYFLTIEAEQADGEPYFYRNVMKKVKLLKSSETMATRSRHIGQKLLTG
DKKHDFIAFMQVDYPSALSNRQLASYTQNCERDIAICVLALTTGIRLSELAQANVSDLNLEQLTITVIRKGGQQDTVPIA
PWGLPYLQDYVQIRQQRYLAANERALFVTKYRGQAKRISNYAIEKLVAKYSEAFGVRLTPHKFRHTLATDLMSATHSETI
VATQLGQTTTQATHLYTHVVDDEQRSAMDKLE
MDQQRYLELCEQRLADLPDYVRKFYINRQANAYSSATLYQYLQEYVRFFSWLIDEQIVTVQTTKDIPLVALDKMKLEDIE
LYKIFLMNKRKANNHKLSFQAVNRSINALNALWYFLTIEAEQADGEPYFYRNVMKKVKLLKSSETMATRSRHIGQKLLTG
DKKHDFIAFMQVDYPSALSNRQLASYTQNCERDIAICVLALTTGIRLSELAQANVSDLNLEQLTITVIRKGGQQDTVPIA
PWGLPYLQDYVQIRQQRYLAANERALFVTKYRGQAKRISNYAIEKLVAKYSEAFGVRLTPHKFRHTLATDLMSATHSETI
VATQLGQTTTQATHLYTHVVDDEQRSAMDKLE
Nucleotide
Download Length: 1059 bp
>NTDB_id=167802 A4W88_RS05155 WP_025015780.1 992207..993265(+) (xerS) [Latilactobacillus sakei strain TMW 1.1398]
ATGGACCAACAACGTTATCTCGAACTATGTGAACAACGCTTGGCGGATCTTCCCGATTACGTCCGTAAATTTTATATTAA
TCGGCAAGCCAATGCATACTCCTCTGCAACGCTCTATCAATATCTCCAAGAATACGTCCGCTTCTTCTCCTGGTTAATTG
ACGAACAAATCGTTACTGTTCAAACGACTAAGGATATCCCTCTTGTTGCGCTTGATAAGATGAAATTAGAAGATATCGAA
CTCTATAAGATCTTTTTAATGAATAAACGAAAAGCAAATAATCACAAGCTCTCCTTTCAGGCTGTTAATCGCTCTATCAA
CGCTTTGAATGCGCTCTGGTACTTCCTGACGATTGAAGCCGAACAAGCCGATGGTGAGCCTTATTTCTACCGCAACGTCA
TGAAAAAAGTCAAACTGCTCAAATCATCCGAGACAATGGCCACTCGTTCCCGCCATATCGGTCAAAAGTTGCTCACCGGT
GATAAAAAACACGACTTCATTGCCTTTATGCAAGTCGACTATCCCAGTGCGCTATCTAATCGCCAACTCGCTTCTTATAC
GCAGAATTGTGAACGGGATATTGCGATTTGCGTATTGGCACTCACTACCGGCATTCGTCTTTCCGAACTCGCCCAAGCTA
ACGTTTCTGATTTAAACCTTGAACAACTAACAATTACGGTTATTCGCAAAGGCGGTCAACAAGATACCGTGCCGATCGCA
CCTTGGGGTTTACCTTATCTGCAAGATTACGTTCAAATCCGGCAACAACGCTATTTAGCCGCTAACGAACGGGCCTTATT
TGTCACAAAGTATCGCGGTCAAGCGAAGCGAATCAGTAACTATGCCATTGAAAAACTGGTAGCTAAGTACTCTGAAGCTT
TTGGCGTTCGACTAACGCCGCATAAATTCCGTCATACACTCGCAACCGATCTGATGTCAGCGACCCACAGCGAAACGATC
GTAGCGACCCAATTGGGCCAAACCACCACGCAGGCCACCCATTTGTATACGCACGTGGTTGATGACGAACAGCGCTCGGC
AATGGATAAGCTCGAATGA
ATGGACCAACAACGTTATCTCGAACTATGTGAACAACGCTTGGCGGATCTTCCCGATTACGTCCGTAAATTTTATATTAA
TCGGCAAGCCAATGCATACTCCTCTGCAACGCTCTATCAATATCTCCAAGAATACGTCCGCTTCTTCTCCTGGTTAATTG
ACGAACAAATCGTTACTGTTCAAACGACTAAGGATATCCCTCTTGTTGCGCTTGATAAGATGAAATTAGAAGATATCGAA
CTCTATAAGATCTTTTTAATGAATAAACGAAAAGCAAATAATCACAAGCTCTCCTTTCAGGCTGTTAATCGCTCTATCAA
CGCTTTGAATGCGCTCTGGTACTTCCTGACGATTGAAGCCGAACAAGCCGATGGTGAGCCTTATTTCTACCGCAACGTCA
TGAAAAAAGTCAAACTGCTCAAATCATCCGAGACAATGGCCACTCGTTCCCGCCATATCGGTCAAAAGTTGCTCACCGGT
GATAAAAAACACGACTTCATTGCCTTTATGCAAGTCGACTATCCCAGTGCGCTATCTAATCGCCAACTCGCTTCTTATAC
GCAGAATTGTGAACGGGATATTGCGATTTGCGTATTGGCACTCACTACCGGCATTCGTCTTTCCGAACTCGCCCAAGCTA
ACGTTTCTGATTTAAACCTTGAACAACTAACAATTACGGTTATTCGCAAAGGCGGTCAACAAGATACCGTGCCGATCGCA
CCTTGGGGTTTACCTTATCTGCAAGATTACGTTCAAATCCGGCAACAACGCTATTTAGCCGCTAACGAACGGGCCTTATT
TGTCACAAAGTATCGCGGTCAAGCGAAGCGAATCAGTAACTATGCCATTGAAAAACTGGTAGCTAAGTACTCTGAAGCTT
TTGGCGTTCGACTAACGCCGCATAAATTCCGTCATACACTCGCAACCGATCTGATGTCAGCGACCCACAGCGAAACGATC
GTAGCGACCCAATTGGGCCAAACCACCACGCAGGCCACCCATTTGTATACGCACGTGGTTGATGACGAACAGCGCTCGGC
AATGGATAAGCTCGAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xerS | Streptococcus pneumoniae R6 |
46.067 |
100 |
0.466 |