Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   A4W88_RS04565 Genome accession   NZ_CP017275
Coordinates   873621..874295 (+) Length   224 a.a.
NCBI ID   WP_011374555.1    Uniprot ID   Q38XC8
Organism   Latilactobacillus sakei strain TMW 1.1398     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 868621..879295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W88_RS04550 (A4W88_04520) - 868822..871470 (+) 2649 WP_011374552.1 valine--tRNA ligase -
  A4W88_RS04555 (A4W88_04525) - 871592..872896 (+) 1305 WP_076632400.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  A4W88_RS04560 (A4W88_04530) - 872897..873547 (+) 651 WP_016265026.1 HAD family hydrolase -
  A4W88_RS04565 (A4W88_04535) ysxA/radC 873621..874295 (+) 675 WP_011374555.1 DNA repair protein RadC Machinery gene
  A4W88_RS04570 (A4W88_04540) - 874459..875463 (+) 1005 WP_011374556.1 rod shape-determining protein -
  A4W88_RS04575 (A4W88_04545) mreC 875621..876481 (+) 861 WP_011374557.1 rod shape-determining protein MreC -
  A4W88_RS04580 (A4W88_04550) mreD 876483..877013 (+) 531 WP_041820821.1 rod shape-determining protein MreD -
  A4W88_RS04585 (A4W88_04555) - 877030..877701 (+) 672 WP_011374559.1 septum site-determining protein MinC -
  A4W88_RS04590 (A4W88_04560) minD 877703..878497 (+) 795 WP_016265029.1 septum site-determining protein MinD -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25083.87 Da        Isoelectric Point: 6.9595

>NTDB_id=167799 A4W88_RS04565 WP_011374555.1 873621..874295(+) (ysxA/radC) [Latilactobacillus sakei strain TMW 1.1398]
MLTSQSKLQPREQVALYGAASLSDEQLATVILRSGTQHLPVEVVAQRLLQRYPDFQDLEQADLVQLRQIEGIGPVKAIEL
QAICELSRRIQNQRTLRFGVVASSQMVGQRMIESLAGETQEQLLAVYLDVKNQIIQIKQLYLGTLNSSVAHPREVFKWAV
QYSAAKFILVHNHPSGQLAPSTQDINFTKRIVNCGQLMGITCLDHLIIGSSQYLSLREEGYLVD

Nucleotide


Download         Length: 675 bp        

>NTDB_id=167799 A4W88_RS04565 WP_011374555.1 873621..874295(+) (ysxA/radC) [Latilactobacillus sakei strain TMW 1.1398]
ATGTTAACGAGTCAATCAAAGTTACAACCCAGAGAGCAAGTCGCACTGTATGGTGCGGCCAGTCTAAGTGATGAACAATT
AGCAACCGTAATTTTACGTTCAGGCACCCAACATTTACCCGTTGAAGTCGTTGCACAACGATTATTGCAACGGTACCCCG
ACTTTCAAGATCTTGAGCAAGCGGACTTAGTACAATTACGTCAAATCGAAGGTATTGGACCGGTTAAAGCGATTGAACTC
CAAGCGATTTGTGAGTTAAGTCGGCGCATTCAAAATCAGCGGACATTACGTTTTGGTGTAGTGGCTTCTAGTCAGATGGT
AGGCCAACGAATGATTGAATCCTTAGCGGGAGAGACACAAGAACAGCTATTAGCGGTCTATTTAGATGTTAAAAATCAGA
TTATTCAGATTAAGCAACTCTATCTGGGCACACTTAATAGTTCTGTTGCACATCCGCGGGAAGTCTTCAAATGGGCGGTT
CAGTATTCAGCGGCTAAGTTTATCTTGGTCCATAATCACCCGAGCGGTCAATTGGCACCATCAACGCAAGATATTAACTT
TACAAAAAGAATTGTTAATTGCGGACAGTTGATGGGGATTACTTGTTTGGATCATTTAATCATTGGTAGCTCACAGTACT
TAAGCCTACGTGAAGAAGGGTATCTAGTCGATTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(7-78)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38XC8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

43.056

96.429

0.415
  radC Streptococcus pneumoniae TIGR4

41.553

97.768

0.406
  radC Streptococcus pneumoniae R6

41.096

97.768

0.402
  radC Streptococcus pneumoniae D39

41.096

97.768

0.402
  radC Streptococcus gordonii str. Challis substr. CH1

38.356

97.768

0.375